Click here to switch to the map view.

The map label for this gene is rbsC [H]

Identifier: 66046105

GI number: 66046105

Start: 3448348

End: 3449334

Strand: Reverse

Name: rbsC [H]

Synonym: Psyr_2874

Alternate gene names: 66046105

Gene position: 3449334-3448348 (Counterclockwise)

Preceding gene: 66046106

Following gene: 66046103

Centisome position: 56.6

GC content: 61.6

Gene sequence:

>987_bases
ATGAATACGCTGACCCTGACGACCTCTTCGACGCTGATCAAGGTGCTGCCGCGCCTGTTGCCAGCGGTCCTGCCGCTGTT
GGTGCTGATCATCCTGCTGTTTTTCGCGATCAATGCACCGGGCTTTCTGAGTTGGGGCAATCTGTCGAGTCTGGTGCTGA
ACAACTTTGTGTTGCTGGCCATCGTGGCGATCGGCATGAACTGGGCTGTTGCGGCTGGCGGTATCGATCTATCGGTGGGC
ACGGCGCTGGACTTTGCCAGCCTGGGTTTCGTGGTCACCCTGAATGGCGGTCATGGTCTGGGCGCGGCCGTTGCGGTGGC
TATGCTGGCAGGGGGCATCGCCGGGGCGTTCAACGCGATGCTGATCGCCGGGCTGCGTATTTCGCCGTTCCTGGCGACAC
TGGGGACGCTGTTTATCGGTACCAGCGTGCAGCAGTTGTTATCCGACGGTGGCCAGCCGATCTATATCGCTCAGGGCGCG
TTGCCGGGTATCAGCGCTGTGCTGATCCTCGGCGTGCCATTGCCGCTGCTGGTGGTCGGCGTGCTGGCAGCGCTTTACGG
GCTGATCCTGGCGCGCGGACGTCTGGGGCGGGAAATCCTCGCGCTGGGCACGCAGCCGCAACTGGCGTATTACTCGGGCT
TGCCCACGCGACGCATTGCCATGCAGGTGTTTTTCGCCAGCGCGCTGGCCTGTGCGGTGGCGGGTATCCTGCTCAGCTCC
ACGGTTAACGCCTACGTACCGATGTCGGGCAACGCTTACCTGATCAATGCCATCGGCGCCGTGTTCATCGGTACGACGCT
CAGTCGTCAAGGGCGTCCGAATATTCCGGGCACACTTTTGGGCGTGCTGTTCATCAACGTGATCGCCAATGGCCTGTTGC
TGATCGGCTGGAACTTCTATTGGCAGCAGGTTGCGACCGGGGCGCTGATCTTTCTGGTGCTGGCGTTCAGTTTTACCAGT
CGCCACCTGCTGCGTAACGCGGCGTAA

Upstream 100 bases:

>100_bases
TGCTGAACATTTCCAGCTTCTGGGTCAACGGCGTGCAAGGCGTGTTGATTCTGCTGGTGGTGGCATTTTCCGGGGCATTC
GGCCGCCGGGAGGGTGAACA

Downstream 100 bases:

>100_bases
GTGTGCCTCAAGCGTTGCCTTTACCGCTGCCGATCTGCCAGACAAACGGCGGCTCGGTGCCGTTGATGCGCCAGTCACCG
ACAATGCGCGCCTTGTAGAT

Product: inner-membrane translocator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 328

Protein sequence:

>328_residues
MNTLTLTTSSTLIKVLPRLLPAVLPLLVLIILLFFAINAPGFLSWGNLSSLVLNNFVLLAIVAIGMNWAVAAGGIDLSVG
TALDFASLGFVVTLNGGHGLGAAVAVAMLAGGIAGAFNAMLIAGLRISPFLATLGTLFIGTSVQQLLSDGGQPIYIAQGA
LPGISAVLILGVPLPLLVVGVLAALYGLILARGRLGREILALGTQPQLAYYSGLPTRRIAMQVFFASALACAVAGILLSS
TVNAYVPMSGNAYLINAIGAVFIGTTLSRQGRPNIPGTLLGVLFINVIANGLLLIGWNFYWQQVATGALIFLVLAFSFTS
RHLLRNAA

Sequences:

>Translated_328_residues
MNTLTLTTSSTLIKVLPRLLPAVLPLLVLIILLFFAINAPGFLSWGNLSSLVLNNFVLLAIVAIGMNWAVAAGGIDLSVG
TALDFASLGFVVTLNGGHGLGAAVAVAMLAGGIAGAFNAMLIAGLRISPFLATLGTLFIGTSVQQLLSDGGQPIYIAQGA
LPGISAVLILGVPLPLLVVGVLAALYGLILARGRLGREILALGTQPQLAYYSGLPTRRIAMQVFFASALACAVAGILLSS
TVNAYVPMSGNAYLINAIGAVFIGTTLSRQGRPNIPGTLLGVLFINVIANGLLLIGWNFYWQQVATGALIFLVLAFSFTS
RHLLRNAA
>Mature_328_residues
MNTLTLTTSSTLIKVLPRLLPAVLPLLVLIILLFFAINAPGFLSWGNLSSLVLNNFVLLAIVAIGMNWAVAAGGIDLSVG
TALDFASLGFVVTLNGGHGLGAAVAVAMLAGGIAGAFNAMLIAGLRISPFLATLGTLFIGTSVQQLLSDGGQPIYIAQGA
LPGISAVLILGVPLPLLVVGVLAALYGLILARGRLGREILALGTQPQLAYYSGLPTRRIAMQVFFASALACAVAGILLSS
TVNAYVPMSGNAYLINAIGAVFIGTTLSRQGRPNIPGTLLGVLFINVIANGLLLIGWNFYWQQVATGALIFLVLAFSFTS
RHLLRNAA

Specific function: Part of the binding-protein-dependent transport system for ribose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1172

COG function: function code G; Ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788896, Length=312, Percent_Identity=33.6538461538462, Blast_Score=104, Evalue=9e-24,
Organism=Escherichia coli, GI87082395, Length=319, Percent_Identity=29.4670846394984, Blast_Score=93, Evalue=3e-20,
Organism=Escherichia coli, GI1787794, Length=302, Percent_Identity=29.8013245033113, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI145693152, Length=303, Percent_Identity=27.7227722772277, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1790524, Length=289, Percent_Identity=29.757785467128, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1790191, Length=322, Percent_Identity=30.7453416149068, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1787793, Length=291, Percent_Identity=30.2405498281787, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI145693214, Length=246, Percent_Identity=32.1138211382114, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1789992, Length=132, Percent_Identity=32.5757575757576, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 33877; Mature: 33877

Theoretical pI: Translated: 10.65; Mature: 10.65

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNTLTLTTSSTLIKVLPRLLPAVLPLLVLIILLFFAINAPGFLSWGNLSSLVLNNFVLLA
CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
IVAIGMNWAVAAGGIDLSVGTALDFASLGFVVTLNGGHGLGAAVAVAMLAGGIAGAFNAM
HHHHCCCCEEEECCCEEECCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LIAGLRISPFLATLGTLFIGTSVQQLLSDGGQPIYIAQGALPGISAVLILGVPLPLLVVG
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHHHHHH
VLAALYGLILARGRLGREILALGTQPQLAYYSGLPTRRIAMQVFFASALACAVAGILLSS
HHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TVNAYVPMSGNAYLINAIGAVFIGTTLSRQGRPNIPGTLLGVLFINVIANGLLLIGWNFY
HHCEEEECCCCEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHH
WQQVATGALIFLVLAFSFTSRHLLRNAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNTLTLTTSSTLIKVLPRLLPAVLPLLVLIILLFFAINAPGFLSWGNLSSLVLNNFVLLA
CCEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH
IVAIGMNWAVAAGGIDLSVGTALDFASLGFVVTLNGGHGLGAAVAVAMLAGGIAGAFNAM
HHHHCCCCEEEECCCEEECCCHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHH
LIAGLRISPFLATLGTLFIGTSVQQLLSDGGQPIYIAQGALPGISAVLILGVPLPLLVVG
HHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCHHHHHHH
VLAALYGLILARGRLGREILALGTQPQLAYYSGLPTRRIAMQVFFASALACAVAGILLSS
HHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
TVNAYVPMSGNAYLINAIGAVFIGTTLSRQGRPNIPGTLLGVLFINVIANGLLLIGWNFY
HHCEEEECCCCEEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEHHHH
WQQVATGALIFLVLAFSFTSRHLLRNAA
HHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7921236; 9353933; 9384377 [H]