| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is 66046003
Identifier: 66046003
GI number: 66046003
Start: 3353250
End: 3353783
Strand: Reverse
Name: 66046003
Synonym: Psyr_2767
Alternate gene names: NA
Gene position: 3353783-3353250 (Counterclockwise)
Preceding gene: 66046004
Following gene: 66046002
Centisome position: 55.04
GC content: 64.61
Gene sequence:
>534_bases ATGCCTATCACAGCGCAGCAACTGCTGCAGATCCTCCCGAACGCCGGCCAGAAAGCCGGCGTTTTTGCACCCGTTCTCAA TACGGCGATGAGCAAGTACCAGATCGTGACACCGCTGCGCATCGCGGCATTCATTGCCCAGGTCGGTCATGAATCCGGCC AGCTGCGCTACGTCCGCGAGATTTGGGGGCCGACTCCGCAGCAGTTGGGGTACGAGGGGCGTAAAGACCTGGGCAATACC GTGCCGGGCGATGGCTCCAAATACCGCGGGCGCGGCCTGATCCAGATCACCGGGCGGGCGAACTACGCCGAGTGCGCCGA AGCGCTGGGCCTGGACCTGATCAACCATCCCGAATTGCTCGAGCTGGCGCAGCACGCCGCGATGTCGGCTGCGTGGTTCT GGCACCGGGCCGCGCTCAACACGCTGGCCGACAAGGGCGATTTCCTGACGATCACCCGTCGCATCAATGGCGGCACGAAC GGACTGGCTGATCGGCAGGCGCTGTACGCCCGAGCGCTTGAGGTGCTGGCGTGA
Upstream 100 bases:
>100_bases TCCTTGTGTAATTGATGCCTAACTGACGGTTTCAGTTATAGGGAGGACACATCAATGTTTTTCCTCGGTAGCACCTAGTT TTTTGTTTGGAGAAAATCGA
Downstream 100 bases:
>100_bases AGGCCCTGCCGTGGAGGGCTTTGGGCCTGCTGCTGATCCTGCTGGCGCTGGCCGGCGCGTTGTACGGGGCATACCGGCAA GGCGTGACCGTCACCGATCT
Product: glycoside hydrolase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 177; Mature: 176
Protein sequence:
>177_residues MPITAQQLLQILPNAGQKAGVFAPVLNTAMSKYQIVTPLRIAAFIAQVGHESGQLRYVREIWGPTPQQLGYEGRKDLGNT VPGDGSKYRGRGLIQITGRANYAECAEALGLDLINHPELLELAQHAAMSAAWFWHRAALNTLADKGDFLTITRRINGGTN GLADRQALYARALEVLA
Sequences:
>Translated_177_residues MPITAQQLLQILPNAGQKAGVFAPVLNTAMSKYQIVTPLRIAAFIAQVGHESGQLRYVREIWGPTPQQLGYEGRKDLGNT VPGDGSKYRGRGLIQITGRANYAECAEALGLDLINHPELLELAQHAAMSAAWFWHRAALNTLADKGDFLTITRRINGGTN GLADRQALYARALEVLA >Mature_176_residues PITAQQLLQILPNAGQKAGVFAPVLNTAMSKYQIVTPLRIAAFIAQVGHESGQLRYVREIWGPTPQQLGYEGRKDLGNTV PGDGSKYRGRGLIQITGRANYAECAEALGLDLINHPELLELAQHAAMSAAWFWHRAALNTLADKGDFLTITRRINGGTNG LADRQALYARALEVLA
Specific function: Unknown
COG id: COG3179
COG function: function code R; Predicted chitinase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: To phage D29 and phage L5 gp10 [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000726 [H]
Pfam domain/function: PF00182 Glyco_hydro_19 [H]
EC number: NA
Molecular weight: Translated: 19247; Mature: 19116
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPITAQQLLQILPNAGQKAGVFAPVLNTAMSKYQIVTPLRIAAFIAQVGHESGQLRYVRE CCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHH IWGPTPQQLGYEGRKDLGNTVPGDGSKYRGRGLIQITGRANYAECAEALGLDLINHPELL HHCCCHHHHCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHH ELAQHAAMSAAWFWHRAALNTLADKGDFLTITRRINGGTNGLADRQALYARALEVLA HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHC >Mature Secondary Structure PITAQQLLQILPNAGQKAGVFAPVLNTAMSKYQIVTPLRIAAFIAQVGHESGQLRYVRE CCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEHHHH IWGPTPQQLGYEGRKDLGNTVPGDGSKYRGRGLIQITGRANYAECAEALGLDLINHPELL HHCCCHHHHCCCCHHHCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCCCCCCHHHH ELAQHAAMSAAWFWHRAALNTLADKGDFLTITRRINGGTNGLADRQALYARALEVLA HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 7542800 [H]