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The map label for this gene is yciR [C]

Identifier: 66045833

GI number: 66045833

Start: 3043718

End: 3045322

Strand: Direct

Name: yciR [C]

Synonym: Psyr_2597

Alternate gene names: 66045833

Gene position: 3043718-3045322 (Clockwise)

Preceding gene: 66045832

Following gene: 66045834

Centisome position: 49.95

GC content: 57.32

Gene sequence:

>1605_bases
ATGACTTTCCTGCGCAGCCCACACATGGTTCGTAAGTACCTTTACACCGTATTGTGGTTTTATGTGCTCTCTATTTTCCT
GTTGGCAATCGCGTGGGAATTCGAACTTGAATCCCTCGCCATGGCCGCAATGGGCTTGCCCTATGACCAGGACTTCGAAA
ATGCCGAGCGTTGGCGTTTTGTATTGACCTCGACAGGCTTTGCCGTGTTATCGATGGTGATACCGTTCATTCTTCTGAAA
CGCCTGATGCAACAACTCCATAGCAGCTACAACGACTTGCTCGAGTCACAGGCGCTCAGCGAATCTCTGGCCCGCCACGA
TCCATTGTCCGGCTTGCTCAATCGGCGTGTGTTTCACGAGCAACTGGTTGCGCGGTTGCAGCAACCAGCGACACAGACGG
CGGTTTTTCTGATCGACCTGGATAAATTCAAGCTGATCAACGATACCCACGGGCATGCGGCAGGAGACGCGGCTATTTGC
GCCGTTGCCGAAAGCCTGCGCGACGCCACTGTCGGGTGGCAGGCTTCCGTGGCTCGACTGGGCGGCGACGAGTTCGGTCT
GGCGGTCAGTGGTGACTTCAGTCATGCCGAACTGGCGCCGCTCGCTGAAAACATTCTGGCCAAAATCGCAGCATCCAGCG
TTGGCCTGCCGCGTGTGGCCCTGAGTGCGACCCTCGGCATTGCCATTGCGCCAATGGACGGCTCAGACCCCGACCTCTTG
CTGCAACGTGCGGACAGCGCCATGTACCGCGGTAAAGCCGGTGGCCGAGCCAGGTTTCATTTCTATGAAGTCAGCTTCGA
GCGCGAGCAGCGTCTGCAGGAGCAGTTCGCGCGCGAACTCACCCTGGCTATCGAAGAGAAAGATATTCAACCGTTCTATC
AGCCTATCGTCAGCCTTCCCGAGCAACGCCTGGCGGGGTTCGAACTGCTGGCGCGATGGCTGCATCCCGAGCGCGGGATC
ATCCTGCCGCTTGACTTCATTCCTGTGGCGGAACAGTTGGGGCTGATCAAACCACTCACCGCGACCCTTTTGCTTCAAGC
CTTCGATCAGGCACGCGATTGGCCAAGCGACTTTACGCTGGCGATCAACGTTACCTCACTGATGATCGAAAGCCCCGACT
TTCCTGACTGGCTGGAACAGCTGGCCAATGAAGGGAAATTTCCGCTGAGTCGGCTGGAAGTGGAAGTGACGGAAAACGCA
CTGGTCGCCAATGTCGACAGTGCCCGCCTGAATCTGGAGCGTCTGCGCGCGATGGGCGTGAGCGTCGCTCTGGACGATTT
CGGTACCGGCTATTCAGGTCTTTATCATCTGACCAGGCTGGCCATCGACAAAATCAAGATCGACAGATCGTTCTTCGACA
CGGCGCTTGAGAACCAGAACGAGATGGTCAAGGCCATCCTCGCTCTGGGTAAAAGCCTGCGCATGAAAATCACCGCCGAG
GGCGTTGAGCACGAACGGCTCGCAGACTGGCTGGCCACCCATGAGTGCGACTTTGCCCAAGGCTACCTGTTCGGACGACC
GTTGCCGTTGGCCCAGGTGAAAGAGCTACTGGCAATGAGTGGTTCCGAAGGGCCGGTGAGGGCATTGGCGGTTCCTGGAA
AATAA

Upstream 100 bases:

>100_bases
CACTATCGAAATCACCACGCTACAGCCTCAAGACTGATAGCCGGCTACCGATACGCTGCTTATAACCGTTGCACCCGCCG
TCATTTCGAGCATTGTAACT

Downstream 100 bases:

>100_bases
GGGGCATGAGCTTCAAGTCGGCGCTCTCGAACTTCAATGCGGAAGTTTAGATTCACCGGAGGCGATAAGCGTTTCTCTGA
TACTTGTCGCTCACTAAAAC

Product: GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 534; Mature: 533

Protein sequence:

>534_residues
MTFLRSPHMVRKYLYTVLWFYVLSIFLLAIAWEFELESLAMAAMGLPYDQDFENAERWRFVLTSTGFAVLSMVIPFILLK
RLMQQLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLVARLQQPATQTAVFLIDLDKFKLINDTHGHAAGDAAIC
AVAESLRDATVGWQASVARLGGDEFGLAVSGDFSHAELAPLAENILAKIAASSVGLPRVALSATLGIAIAPMDGSDPDLL
LQRADSAMYRGKAGGRARFHFYEVSFEREQRLQEQFARELTLAIEEKDIQPFYQPIVSLPEQRLAGFELLARWLHPERGI
ILPLDFIPVAEQLGLIKPLTATLLLQAFDQARDWPSDFTLAINVTSLMIESPDFPDWLEQLANEGKFPLSRLEVEVTENA
LVANVDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTRLAIDKIKIDRSFFDTALENQNEMVKAILALGKSLRMKITAE
GVEHERLADWLATHECDFAQGYLFGRPLPLAQVKELLAMSGSEGPVRALAVPGK

Sequences:

>Translated_534_residues
MTFLRSPHMVRKYLYTVLWFYVLSIFLLAIAWEFELESLAMAAMGLPYDQDFENAERWRFVLTSTGFAVLSMVIPFILLK
RLMQQLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLVARLQQPATQTAVFLIDLDKFKLINDTHGHAAGDAAIC
AVAESLRDATVGWQASVARLGGDEFGLAVSGDFSHAELAPLAENILAKIAASSVGLPRVALSATLGIAIAPMDGSDPDLL
LQRADSAMYRGKAGGRARFHFYEVSFEREQRLQEQFARELTLAIEEKDIQPFYQPIVSLPEQRLAGFELLARWLHPERGI
ILPLDFIPVAEQLGLIKPLTATLLLQAFDQARDWPSDFTLAINVTSLMIESPDFPDWLEQLANEGKFPLSRLEVEVTENA
LVANVDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTRLAIDKIKIDRSFFDTALENQNEMVKAILALGKSLRMKITAE
GVEHERLADWLATHECDFAQGYLFGRPLPLAQVKELLAMSGSEGPVRALAVPGK
>Mature_533_residues
TFLRSPHMVRKYLYTVLWFYVLSIFLLAIAWEFELESLAMAAMGLPYDQDFENAERWRFVLTSTGFAVLSMVIPFILLKR
LMQQLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHEQLVARLQQPATQTAVFLIDLDKFKLINDTHGHAAGDAAICA
VAESLRDATVGWQASVARLGGDEFGLAVSGDFSHAELAPLAENILAKIAASSVGLPRVALSATLGIAIAPMDGSDPDLLL
QRADSAMYRGKAGGRARFHFYEVSFEREQRLQEQFARELTLAIEEKDIQPFYQPIVSLPEQRLAGFELLARWLHPERGII
LPLDFIPVAEQLGLIKPLTATLLLQAFDQARDWPSDFTLAINVTSLMIESPDFPDWLEQLANEGKFPLSRLEVEVTENAL
VANVDSARLNLERLRAMGVSVALDDFGTGYSGLYHLTRLAIDKIKIDRSFFDTALENQNEMVKAILALGKSLRMKITAEG
VEHERLADWLATHECDFAQGYLFGRPLPLAQVKELLAMSGSEGPVRALAVPGK

Specific function: Unknown

COG id: COG5001

COG function: function code T; Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=436, Percent_Identity=33.0275229357798, Blast_Score=213, Evalue=2e-56,
Organism=Escherichia coli, GI87081921, Length=422, Percent_Identity=30.8056872037915, Blast_Score=178, Evalue=6e-46,
Organism=Escherichia coli, GI87081743, Length=244, Percent_Identity=37.2950819672131, Blast_Score=151, Evalue=1e-37,
Organism=Escherichia coli, GI87081845, Length=235, Percent_Identity=41.7021276595745, Blast_Score=148, Evalue=9e-37,
Organism=Escherichia coli, GI1787055, Length=241, Percent_Identity=35.6846473029046, Blast_Score=146, Evalue=3e-36,
Organism=Escherichia coli, GI226510982, Length=418, Percent_Identity=28.7081339712919, Blast_Score=133, Evalue=3e-32,
Organism=Escherichia coli, GI1786507, Length=236, Percent_Identity=34.7457627118644, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1788502, Length=240, Percent_Identity=35.4166666666667, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87081980, Length=254, Percent_Identity=34.6456692913386, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1790496, Length=237, Percent_Identity=31.6455696202532, Blast_Score=125, Evalue=7e-30,
Organism=Escherichia coli, GI1788849, Length=249, Percent_Identity=29.718875502008, Blast_Score=103, Evalue=4e-23,
Organism=Escherichia coli, GI87082096, Length=261, Percent_Identity=29.5019157088123, Blast_Score=95, Evalue=1e-20,
Organism=Escherichia coli, GI87081881, Length=176, Percent_Identity=38.6363636363636, Blast_Score=94, Evalue=2e-20,
Organism=Escherichia coli, GI145693134, Length=182, Percent_Identity=35.1648351648352, Blast_Score=82, Evalue=6e-17,
Organism=Escherichia coli, GI1788381, Length=182, Percent_Identity=35.7142857142857, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI1787262, Length=165, Percent_Identity=28.4848484848485, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081977, Length=187, Percent_Identity=34.2245989304813, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1786584, Length=178, Percent_Identity=29.2134831460674, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI1787816, Length=159, Percent_Identity=30.8176100628931, Blast_Score=70, Evalue=3e-13,
Organism=Escherichia coli, GI1787056, Length=178, Percent_Identity=31.4606741573034, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788085, Length=172, Percent_Identity=27.3255813953488, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082007, Length=197, Percent_Identity=30.4568527918782, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1787410, Length=153, Percent_Identity=27.4509803921569, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1787802, Length=177, Percent_Identity=29.3785310734463, Blast_Score=66, Evalue=5e-12,
Organism=Escherichia coli, GI1788956, Length=158, Percent_Identity=30.379746835443, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 59451; Mature: 59320

Theoretical pI: Translated: 4.94; Mature: 4.94

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFLRSPHMVRKYLYTVLWFYVLSIFLLAIAWEFELESLAMAAMGLPYDQDFENAERWRF
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEE
VLTSTGFAVLSMVIPFILLKRLMQQLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHE
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QLVARLQQPATQTAVFLIDLDKFKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARL
HHHHHHHCCCHHEEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHC
GGDEFGLAVSGDFSHAELAPLAENILAKIAASSVGLPRVALSATLGIAIAPMDGSDPDLL
CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCEEEECCCCCCHHHH
LQRADSAMYRGKAGGRARFHFYEVSFEREQRLQEQFARELTLAIEEKDIQPFYQPIVSLP
HHHHHHHHHCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
EQRLAGFELLARWLHPERGIILPLDFIPVAEQLGLIKPLTATLLLQAFDQARDWPSDFTL
HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEE
AINVTSLMIESPDFPDWLEQLANEGKFPLSRLEVEVTENALVANVDSARLNLERLRAMGV
EEEEEEEEECCCCCHHHHHHHHCCCCCCHHHEEEEEECCEEEECCCHHHHHHHHHHHHCC
SVALDDFGTGYSGLYHLTRLAIDKIKIDRSFFDTALENQNEMVKAILALGKSLRMKITAE
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHEEEEEEC
GVEHERLADWLATHECDFAQGYLFGRPLPLAQVKELLAMSGSEGPVRALAVPGK
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCC
>Mature Secondary Structure 
TFLRSPHMVRKYLYTVLWFYVLSIFLLAIAWEFELESLAMAAMGLPYDQDFENAERWRF
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHEEE
VLTSTGFAVLSMVIPFILLKRLMQQLHSSYNDLLESQALSESLARHDPLSGLLNRRVFHE
EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
QLVARLQQPATQTAVFLIDLDKFKLINDTHGHAAGDAAICAVAESLRDATVGWQASVARL
HHHHHHHCCCHHEEEEEEECCCEEEECCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHC
GGDEFGLAVSGDFSHAELAPLAENILAKIAASSVGLPRVALSATLGIAIAPMDGSDPDLL
CCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCEEEECCCCCCHHHH
LQRADSAMYRGKAGGRARFHFYEVSFEREQRLQEQFARELTLAIEEKDIQPFYQPIVSLP
HHHHHHHHHCCCCCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCC
EQRLAGFELLARWLHPERGIILPLDFIPVAEQLGLIKPLTATLLLQAFDQARDWPSDFTL
HHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEE
AINVTSLMIESPDFPDWLEQLANEGKFPLSRLEVEVTENALVANVDSARLNLERLRAMGV
EEEEEEEEECCCCCHHHHHHHHCCCCCCHHHEEEEEECCEEEECCCHHHHHHHHHHHHCC
SVALDDFGTGYSGLYHLTRLAIDKIKIDRSFFDTALENQNEMVKAILALGKSLRMKITAE
EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCHHHEEEEEEC
GVEHERLADWLATHECDFAQGYLFGRPLPLAQVKELLAMSGSEGPVRALAVPGK
CCCHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]