| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is ygfF [H]
Identifier: 66045723
GI number: 66045723
Start: 2890843
End: 2891589
Strand: Direct
Name: ygfF [H]
Synonym: Psyr_2487
Alternate gene names: 66045723
Gene position: 2890843-2891589 (Clockwise)
Preceding gene: 66045722
Following gene: 66045725
Centisome position: 47.44
GC content: 60.78
Gene sequence:
>747_bases ATGGAAAAAGTCCTCATTATCACCGGTGGTTCGCGCGGGATCGGCGCTGCTACAGCGCGTCTGGCCGCTTCACAGGGTTA TCGGATCTGCATCAACTACCTGTCGGATCATGCCGCTGCCGAAAAGACCGCAGGCCAGGTGAGGGCAATGGGCGCCAGGG CGATCACCGTGCAGGCCGATGTCAGCAACGAAGACGAGATCATGCGGCTGTTTGCCAGGGTCGACTCCGAACTCGGCCGG GTTACCCATCTGGTCAATAATGCGGGCACCCTGGCGCAGGCTTCCAGAGTCGAGGACATGTCGGAATTTCGCCTGTTGAA GATGATGATGAACAACGTCGTCGGCCCGATGCTGTGCAGCAAACATGCCTTGTTGCGCATGTTGCCGGCACACGGGGGGC AAGGCGGCAGCATCGTCAACGTATCGTCACTCGCGGCACGCCTGGGCTCGGCAGGCGAGTACGTCGACTATGCAGCATCC AAAGGAGCGCTGGACACCTTCACCATCGGGCTCTCCAAAGAGGTCGCGGCGGAAAACGTTCGCGTCAACGCGGTACGTCC GGGGTTCATCTTCACCGACTTTCACGCCCTGAGCGGCGATCCGTTCCGCGTCAGCAAGCTTGAGGGGGCATTGCCCATGG GCCGTGGCGGTACCGCCGAGGAAGTGGCCGAAGCGATTCTCTGGTTGCTGTCGGACAATGCGTCTTATGCCACGGGAACA TTCATCGATGTGGCGGGAGGGCGCTAA
Upstream 100 bases:
>100_bases GGCGCTGGACGATAAAGGCTGTCACGATCCGAACCGGCTGGTTAACCTGCGAAGGTTGGCTGGATCCTGATGTAGGCCTT TGAAAAAAACGAGACACTCC
Downstream 100 bases:
>100_bases AGGCGTCCATACTCGGGCAGACGCCTTCAGATCCTGCTTACTGGTCACACCGTGACGGGCGGCGCATTGGCTGGCGGATC GCCGACTGGCGTTTCATTGG
Product: Short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 248; Mature: 248
Protein sequence:
>248_residues MEKVLIITGGSRGIGAATARLAASQGYRICINYLSDHAAAEKTAGQVRAMGARAITVQADVSNEDEIMRLFARVDSELGR VTHLVNNAGTLAQASRVEDMSEFRLLKMMMNNVVGPMLCSKHALLRMLPAHGGQGGSIVNVSSLAARLGSAGEYVDYAAS KGALDTFTIGLSKEVAAENVRVNAVRPGFIFTDFHALSGDPFRVSKLEGALPMGRGGTAEEVAEAILWLLSDNASYATGT FIDVAGGR
Sequences:
>Translated_248_residues MEKVLIITGGSRGIGAATARLAASQGYRICINYLSDHAAAEKTAGQVRAMGARAITVQADVSNEDEIMRLFARVDSELGR VTHLVNNAGTLAQASRVEDMSEFRLLKMMMNNVVGPMLCSKHALLRMLPAHGGQGGSIVNVSSLAARLGSAGEYVDYAAS KGALDTFTIGLSKEVAAENVRVNAVRPGFIFTDFHALSGDPFRVSKLEGALPMGRGGTAEEVAEAILWLLSDNASYATGT FIDVAGGR >Mature_248_residues MEKVLIITGGSRGIGAATARLAASQGYRICINYLSDHAAAEKTAGQVRAMGARAITVQADVSNEDEIMRLFARVDSELGR VTHLVNNAGTLAQASRVEDMSEFRLLKMMMNNVVGPMLCSKHALLRMLPAHGGQGGSIVNVSSLAARLGSAGEYVDYAAS KGALDTFTIGLSKEVAAENVRVNAVRPGFIFTDFHALSGDPFRVSKLEGALPMGRGGTAEEVAEAILWLLSDNASYATGT FIDVAGGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI40254992, Length=251, Percent_Identity=38.2470119521912, Blast_Score=138, Evalue=5e-33, Organism=Homo sapiens, GI15277342, Length=249, Percent_Identity=30.1204819277108, Blast_Score=92, Evalue=4e-19, Organism=Homo sapiens, GI59889578, Length=200, Percent_Identity=34, Blast_Score=92, Evalue=5e-19, Organism=Homo sapiens, GI19923817, Length=253, Percent_Identity=29.6442687747036, Blast_Score=90, Evalue=2e-18, Organism=Homo sapiens, GI32483357, Length=246, Percent_Identity=31.3008130081301, Blast_Score=82, Evalue=3e-16, Organism=Homo sapiens, GI109715829, Length=248, Percent_Identity=28.6290322580645, Blast_Score=76, Evalue=2e-14, Organism=Homo sapiens, GI5031737, Length=245, Percent_Identity=29.7959183673469, Blast_Score=76, Evalue=3e-14, Organism=Homo sapiens, GI7705925, Length=252, Percent_Identity=27.7777777777778, Blast_Score=75, Evalue=5e-14, Organism=Homo sapiens, GI10190704, Length=256, Percent_Identity=31.25, Blast_Score=74, Evalue=1e-13, Organism=Homo sapiens, GI31542939, Length=193, Percent_Identity=30.5699481865285, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI210032110, Length=196, Percent_Identity=30.6122448979592, Blast_Score=71, Evalue=8e-13, Organism=Homo sapiens, GI4758504, Length=213, Percent_Identity=28.169014084507, Blast_Score=70, Evalue=2e-12, Organism=Escherichia coli, GI2367175, Length=245, Percent_Identity=51.8367346938776, Blast_Score=264, Evalue=5e-72, Organism=Escherichia coli, GI1788459, Length=247, Percent_Identity=35.2226720647773, Blast_Score=125, Evalue=4e-30, Organism=Escherichia coli, GI1787335, Length=245, Percent_Identity=31.4285714285714, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789378, Length=245, Percent_Identity=29.3877551020408, Blast_Score=95, Evalue=5e-21, Organism=Escherichia coli, GI1789208, Length=249, Percent_Identity=31.3253012048193, Blast_Score=88, Evalue=6e-19, Organism=Escherichia coli, GI87082160, Length=248, Percent_Identity=28.6290322580645, Blast_Score=85, Evalue=5e-18, Organism=Escherichia coli, GI87082100, Length=252, Percent_Identity=31.3492063492063, Blast_Score=84, Evalue=1e-17, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=27.6422764227642, Blast_Score=83, Evalue=2e-17, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=31.5789473684211, Blast_Score=78, Evalue=6e-16, Organism=Escherichia coli, GI1787891, Length=248, Percent_Identity=30.6451612903226, Blast_Score=75, Evalue=3e-15, Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=29.3877551020408, Blast_Score=74, Evalue=6e-15, Organism=Escherichia coli, GI1789057, Length=260, Percent_Identity=27.3076923076923, Blast_Score=72, Evalue=2e-14, Organism=Escherichia coli, GI1786812, Length=257, Percent_Identity=27.6264591439689, Blast_Score=61, Evalue=5e-11, Organism=Caenorhabditis elegans, GI17555706, Length=245, Percent_Identity=36.3265306122449, Blast_Score=117, Evalue=5e-27, Organism=Caenorhabditis elegans, GI25147288, Length=245, Percent_Identity=34.2857142857143, Blast_Score=113, Evalue=7e-26, Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=37.5968992248062, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI115534694, Length=247, Percent_Identity=31.5789473684211, Blast_Score=100, Evalue=8e-22, Organism=Caenorhabditis elegans, GI71994604, Length=256, Percent_Identity=34.375, Blast_Score=99, Evalue=2e-21, Organism=Caenorhabditis elegans, GI17559104, Length=268, Percent_Identity=30.2238805970149, Blast_Score=87, Evalue=8e-18, Organism=Caenorhabditis elegans, GI17538486, Length=263, Percent_Identity=29.6577946768061, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17544670, Length=263, Percent_Identity=30.7984790874525, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17562904, Length=251, Percent_Identity=29.4820717131474, Blast_Score=82, Evalue=2e-16, Organism=Caenorhabditis elegans, GI17538480, Length=267, Percent_Identity=29.2134831460674, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI17560150, Length=264, Percent_Identity=31.0606060606061, Blast_Score=81, Evalue=5e-16, Organism=Caenorhabditis elegans, GI17560220, Length=266, Percent_Identity=33.0827067669173, Blast_Score=80, Evalue=7e-16, Organism=Caenorhabditis elegans, GI17562910, Length=266, Percent_Identity=31.9548872180451, Blast_Score=80, Evalue=8e-16, Organism=Caenorhabditis elegans, GI17562990, Length=265, Percent_Identity=31.3207547169811, Blast_Score=80, Evalue=9e-16, Organism=Caenorhabditis elegans, GI17562906, Length=264, Percent_Identity=30.3030303030303, Blast_Score=80, Evalue=1e-15, Organism=Caenorhabditis elegans, GI17551412, Length=264, Percent_Identity=29.1666666666667, Blast_Score=79, Evalue=2e-15, Organism=Caenorhabditis elegans, GI17563726, Length=263, Percent_Identity=29.6577946768061, Blast_Score=77, Evalue=8e-15, Organism=Caenorhabditis elegans, GI17538182, Length=213, Percent_Identity=30.5164319248826, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI72000259, Length=271, Percent_Identity=29.520295202952, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560332, Length=264, Percent_Identity=31.4393939393939, Blast_Score=76, Evalue=1e-14, Organism=Caenorhabditis elegans, GI193204405, Length=265, Percent_Identity=28.3018867924528, Blast_Score=74, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17565030, Length=270, Percent_Identity=30.3703703703704, Blast_Score=74, Evalue=7e-14, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=29.2, Blast_Score=74, Evalue=9e-14, Organism=Caenorhabditis elegans, GI17531453, Length=266, Percent_Identity=30.0751879699248, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI17536025, Length=256, Percent_Identity=28.90625, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=31.25, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI193203115, Length=192, Percent_Identity=31.25, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17562908, Length=264, Percent_Identity=29.9242424242424, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17561402, Length=254, Percent_Identity=26.7716535433071, Blast_Score=67, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17536651, Length=253, Percent_Identity=27.6679841897233, Blast_Score=65, Evalue=4e-11, Organism=Caenorhabditis elegans, GI17564282, Length=244, Percent_Identity=29.5081967213115, Blast_Score=64, Evalue=9e-11, Organism=Saccharomyces cerevisiae, GI6322861, Length=194, Percent_Identity=27.8350515463918, Blast_Score=65, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=198, Percent_Identity=30.8080808080808, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI23397609, Length=254, Percent_Identity=37.007874015748, Blast_Score=118, Evalue=4e-27, Organism=Drosophila melanogaster, GI28571526, Length=256, Percent_Identity=37.109375, Blast_Score=115, Evalue=3e-26, Organism=Drosophila melanogaster, GI21357041, Length=253, Percent_Identity=36.7588932806324, Blast_Score=108, Evalue=2e-24, Organism=Drosophila melanogaster, GI24644339, Length=251, Percent_Identity=33.4661354581673, Blast_Score=100, Evalue=7e-22, Organism=Drosophila melanogaster, GI24639444, Length=246, Percent_Identity=30.8943089430894, Blast_Score=99, Evalue=3e-21, Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=32.3886639676113, Blast_Score=87, Evalue=1e-17, Organism=Drosophila melanogaster, GI24643142, Length=249, Percent_Identity=30.1204819277108, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI24584748, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI161076933, Length=196, Percent_Identity=28.5714285714286, Blast_Score=69, Evalue=2e-12, Organism=Drosophila melanogaster, GI24644337, Length=120, Percent_Identity=41.6666666666667, Blast_Score=68, Evalue=5e-12, Organism=Drosophila melanogaster, GI24648693, Length=242, Percent_Identity=26.8595041322314, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI21355889, Length=242, Percent_Identity=26.8595041322314, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007236, Length=244, Percent_Identity=27.4590163934426, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI17737361, Length=203, Percent_Identity=27.0935960591133, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI281364494, Length=201, Percent_Identity=27.363184079602, Blast_Score=65, Evalue=6e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 26118; Mature: 26118
Theoretical pI: Translated: 7.06; Mature: 7.06
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 4.0 %Met (Translated Protein) 4.8 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 4.0 %Met (Mature Protein) 4.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MEKVLIITGGSRGIGAATARLAASQGYRICINYLSDHAAAEKTAGQVRAMGARAITVQAD CCEEEEEECCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC VSNEDEIMRLFARVDSELGRVTHLVNNAGTLAQASRVEDMSEFRLLKMMMNNVVGPMLCS CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KHALLRMLPAHGGQGGSIVNVSSLAARLGSAGEYVDYAASKGALDTFTIGLSKEVAAENV HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCHHHHHCCE RVNAVRPGFIFTDFHALSGDPFRVSKLEGALPMGRGGTAEEVAEAILWLLSDNASYATGT EEEEECCCEEEEEHHHCCCCCEEEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC FIDVAGGR EEECCCCC >Mature Secondary Structure MEKVLIITGGSRGIGAATARLAASQGYRICINYLSDHAAAEKTAGQVRAMGARAITVQAD CCEEEEEECCCCCCCHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEC VSNEDEIMRLFARVDSELGRVTHLVNNAGTLAQASRVEDMSEFRLLKMMMNNVVGPMLCS CCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH KHALLRMLPAHGGQGGSIVNVSSLAARLGSAGEYVDYAASKGALDTFTIGLSKEVAAENV HHHHHHHHHCCCCCCCCEEEHHHHHHHHCCCCCHHHHHCCCCCCEEEEECCCHHHHHCCE RVNAVRPGFIFTDFHALSGDPFRVSKLEGALPMGRGGTAEEVAEAILWLLSDNASYATGT EEEEECCCEEEEEHHHCCCCCEEEEHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCC FIDVAGGR EEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9278503; 7764507 [H]