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The map label for this gene is aam1 [H]

Identifier: 66045725

GI number: 66045725

Start: 2892304

End: 2894322

Strand: Direct

Name: aam1 [H]

Synonym: Psyr_2489

Alternate gene names: 66045725

Gene position: 2892304-2894322 (Clockwise)

Preceding gene: 66045723

Following gene: 66045726

Centisome position: 47.46

GC content: 60.23

Gene sequence:

>2019_bases
ATGAATGAACAGCCATACGGTCCGGATTCCCTGGCCACCGATGTCCCGCAAGCAACCCTTCCGCTGTCACTGACCCAGGC
GCTGCAATTACCCCGCATCGTGATTGAAGACACGCTGCCGGTAATCGACGGTGGCCTGTTCGCGGCCAAGGCGATCATCG
GGCAACCGGTTACCGTGACCAGCAAGGTCTATGCCGATGGGCACGACAAGATGGCGGTCAATATCCGCTGGCGTGCTGCC
GATGAAGAACACTGGCACAGCGCGCCAATGCGCGAGCTGGGCAATGACAGCTGGGTCGGTGAATTCACCCCGACCTCGGT
CAGCCGCCATGTGTTTCGCCTCGAAGCCTGGATCGATCAGTTCGGCAGCTATCGTTATGAGCTGGAGAAGAAGTTCGGCG
CTGGCGTTCCTGTCGATCTGGAGCTGGAAGAGGGCCGCATTCATCTGGTGCATGCCGCCGAGCGCAGCCAGAACGAGCAG
CGCCAGCAAATCGAAGGCCTGCTGGGCCAGCTTGAACAGGGCGATAAAGACGAGAAAGTCGCGCTGTTGTTGCACAGCGA
AACCGCCAGCCTGATGAAACTGGCCGACAATCAGGCCTTCCTCAGCCGCAGCGTCGAGTTCCCGCTGGATGTCGAGCGTG
AGCTGGCGCAGTTTGCCAGCTGGTACGAGCTGTTTCCCCGTTCGATGACCGACGATCCGGCGCGCCACGGCACGTTCAAC
GACGTCCATTCGCGTCTGCCGATCATTCGCGACATGGGCTTCGACGTGTTGTATTTCCCGCCGATTCATCCTATCGGCCG
TGCCCACCGCAAGGGCCCGAACAATTCCCTGACCGCTGGCCCTGATGATCCGGGCAGCCCGTATGCGATCGGCAGCGAGG
ATGGTGGCCATGAAGCCATCCACCCGCAGCTGGGCAGTCGTGAAGATTTCCGTCATCTGGTAAAAGCCGCAGCCGAGCAT
GGCCTGGAAATCGCGCTGGATTTCGCCATCCAGTGTTCCCAGGATCACCCGTGGCTCAAGCAGCATCCGGGCTGGTTCTC
GTGGCGTCCGGACGGCACGATCCGTTATGCGGAAAACCCGCCGAAGAAGTATCAGGACATCGTCAACGTCGATTTCTACG
CACCAGACGCCATCCCCGGCCTGTGGACGGAGTTGCGCGACATCGTTCTGGGCTGGGTCAACGAGGGCGTGAAAATCTTC
CGCGTCGACAACCCGCACACCAAACCGCTGCCGTTCTGGCAGTGGATGATCGGCGAAGTGCGCAGTCAGCACCCCGAGGT
GATGTTCCTGGCCGAAGCCTTTACCAAGCCGGCAATGATGGCGCGCCTGGGCAAGGTCGGTTACAGCCAGAGTTACACCT
ATTTCACCTGGCGCAACACCAAGGCGGAGCTGTCCGAGTACTTCACCCAGCTCAACGAAGTGCCTTGGCGCGACTGTTAT
CGTCCGAATTTCTTCGTCAACACGCCCGACATCAACCCGCGCTTCCTGCATGAGTCCGGTCGTCCCGGGTTTCTGATCCG
GGCGGCACTGGCCACCATGGGTTCCGGGCTGTGGGGTATGTATTCCGGGTTCGAGCTGTGCGAAGCGGCCCCTATTCCCG
GCAAGGAAGAGTATCTGGACTCGGAGAAGTACCAGATTCGGGTTCGCGATTACGCGGCACCGGGCAACATCATTGCCGAG
ATCGCGCAGCTCAACCGCATTCGTCGGCAGAACCCTGCGTTGCAAACCCACTTGGGTCTGAAGCTGTACAACGCGTGGAA
CGACAACATTCTGTACTTCGGCAAGCGCTCGGCGGACGGCAGCAACTTCATTCTGGTTGCCGTCAACCTCGACCCGTACA
ACGCACAGGAAGCGGATTTCGAGTTGCCGCTGTGGGAAATGGGCCTGCCGGATGACGCCGCTACGTCGGGTGAAGACCTG
ATGACCGGGCACCGCTGGACCTGGTACGGCAAGTATCAGCACACGCGTCTCGATCCATCCCAACCGTTTGGAATCTGGCG
TATCCAGGCTGCGCAATAA

Upstream 100 bases:

>100_bases
CGAGTCGCCAGCACAGTGCGATCGTACGCTGCCATACCGTCAATTTTTCCATTGCATGGAATGCACAGGAGCGTCCCTGG
GGCGTGAGGAGTGATGCTCG

Downstream 100 bases:

>100_bases
CACTCCCGAGGAGTCAATAATGGCCAAAAAGCCCGGTGACGCGACATTTATCAAAGACCCGCTCTGGTACAAGGATGCGG
TGATTTATCAGGTTCACGTG

Product: Alpha amylase, catalytic region

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 672; Mature: 672

Protein sequence:

>672_residues
MNEQPYGPDSLATDVPQATLPLSLTQALQLPRIVIEDTLPVIDGGLFAAKAIIGQPVTVTSKVYADGHDKMAVNIRWRAA
DEEHWHSAPMRELGNDSWVGEFTPTSVSRHVFRLEAWIDQFGSYRYELEKKFGAGVPVDLELEEGRIHLVHAAERSQNEQ
RQQIEGLLGQLEQGDKDEKVALLLHSETASLMKLADNQAFLSRSVEFPLDVERELAQFASWYELFPRSMTDDPARHGTFN
DVHSRLPIIRDMGFDVLYFPPIHPIGRAHRKGPNNSLTAGPDDPGSPYAIGSEDGGHEAIHPQLGSREDFRHLVKAAAEH
GLEIALDFAIQCSQDHPWLKQHPGWFSWRPDGTIRYAENPPKKYQDIVNVDFYAPDAIPGLWTELRDIVLGWVNEGVKIF
RVDNPHTKPLPFWQWMIGEVRSQHPEVMFLAEAFTKPAMMARLGKVGYSQSYTYFTWRNTKAELSEYFTQLNEVPWRDCY
RPNFFVNTPDINPRFLHESGRPGFLIRAALATMGSGLWGMYSGFELCEAAPIPGKEEYLDSEKYQIRVRDYAAPGNIIAE
IAQLNRIRRQNPALQTHLGLKLYNAWNDNILYFGKRSADGSNFILVAVNLDPYNAQEADFELPLWEMGLPDDAATSGEDL
MTGHRWTWYGKYQHTRLDPSQPFGIWRIQAAQ

Sequences:

>Translated_672_residues
MNEQPYGPDSLATDVPQATLPLSLTQALQLPRIVIEDTLPVIDGGLFAAKAIIGQPVTVTSKVYADGHDKMAVNIRWRAA
DEEHWHSAPMRELGNDSWVGEFTPTSVSRHVFRLEAWIDQFGSYRYELEKKFGAGVPVDLELEEGRIHLVHAAERSQNEQ
RQQIEGLLGQLEQGDKDEKVALLLHSETASLMKLADNQAFLSRSVEFPLDVERELAQFASWYELFPRSMTDDPARHGTFN
DVHSRLPIIRDMGFDVLYFPPIHPIGRAHRKGPNNSLTAGPDDPGSPYAIGSEDGGHEAIHPQLGSREDFRHLVKAAAEH
GLEIALDFAIQCSQDHPWLKQHPGWFSWRPDGTIRYAENPPKKYQDIVNVDFYAPDAIPGLWTELRDIVLGWVNEGVKIF
RVDNPHTKPLPFWQWMIGEVRSQHPEVMFLAEAFTKPAMMARLGKVGYSQSYTYFTWRNTKAELSEYFTQLNEVPWRDCY
RPNFFVNTPDINPRFLHESGRPGFLIRAALATMGSGLWGMYSGFELCEAAPIPGKEEYLDSEKYQIRVRDYAAPGNIIAE
IAQLNRIRRQNPALQTHLGLKLYNAWNDNILYFGKRSADGSNFILVAVNLDPYNAQEADFELPLWEMGLPDDAATSGEDL
MTGHRWTWYGKYQHTRLDPSQPFGIWRIQAAQ
>Mature_672_residues
MNEQPYGPDSLATDVPQATLPLSLTQALQLPRIVIEDTLPVIDGGLFAAKAIIGQPVTVTSKVYADGHDKMAVNIRWRAA
DEEHWHSAPMRELGNDSWVGEFTPTSVSRHVFRLEAWIDQFGSYRYELEKKFGAGVPVDLELEEGRIHLVHAAERSQNEQ
RQQIEGLLGQLEQGDKDEKVALLLHSETASLMKLADNQAFLSRSVEFPLDVERELAQFASWYELFPRSMTDDPARHGTFN
DVHSRLPIIRDMGFDVLYFPPIHPIGRAHRKGPNNSLTAGPDDPGSPYAIGSEDGGHEAIHPQLGSREDFRHLVKAAAEH
GLEIALDFAIQCSQDHPWLKQHPGWFSWRPDGTIRYAENPPKKYQDIVNVDFYAPDAIPGLWTELRDIVLGWVNEGVKIF
RVDNPHTKPLPFWQWMIGEVRSQHPEVMFLAEAFTKPAMMARLGKVGYSQSYTYFTWRNTKAELSEYFTQLNEVPWRDCY
RPNFFVNTPDINPRFLHESGRPGFLIRAALATMGSGLWGMYSGFELCEAAPIPGKEEYLDSEKYQIRVRDYAAPGNIIAE
IAQLNRIRRQNPALQTHLGLKLYNAWNDNILYFGKRSADGSNFILVAVNLDPYNAQEADFELPLWEMGLPDDAATSGEDL
MTGHRWTWYGKYQHTRLDPSQPFGIWRIQAAQ

Specific function: Unknown

COG id: COG0366

COG function: function code G; Glycosidases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 13 family. GlgE subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR021828
- InterPro:   IPR006047
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF00128 Alpha-amylase; PF11896 DUF3416 [H]

EC number: NA

Molecular weight: Translated: 76363; Mature: 76363

Theoretical pI: Translated: 5.31; Mature: 5.31

Prosite motif: PS00019 ACTININ_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEQPYGPDSLATDVPQATLPLSLTQALQLPRIVIEDTLPVIDGGLFAAKAIIGQPVTVT
CCCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCEEECCCCCHHCCHHHHHHHHHCCCEEEE
SKVYADGHDKMAVNIRWRAADEEHWHSAPMRELGNDSWVGEFTPTSVSRHVFRLEAWIDQ
EEEEECCCCEEEEEEEEEECCHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
FGSYRYELEKKFGAGVPVDLELEEGRIHLVHAAERSQNEQRQQIEGLLGQLEQGDKDEKV
HCCCEEEHHHHHCCCCCEEEEECCCEEEEEECHHHCCHHHHHHHHHHHHHHHCCCCCCEE
ALLLHSETASLMKLADNQAFLSRSVEFPLDVERELAQFASWYELFPRSMTDDPARHGTFN
EEEEECCHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
DVHSRLPIIRDMGFDVLYFPPIHPIGRAHRKGPNNSLTAGPDDPGSPYAIGSEDGGHEAI
HHHHCCCHHHHCCCCEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
HPQLGSREDFRHLVKAAAEHGLEIALDFAIQCSQDHPWLKQHPGWFSWRPDGTIRYAENP
CCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCHHHHCCCCEEECCCCEEEECCCC
PKKYQDIVNVDFYAPDAIPGLWTELRDIVLGWVNEGVKIFRVDNPHTKPLPFWQWMIGEV
CHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH
RSQHPEVMFLAEAFTKPAMMARLGKVGYSQSYTYFTWRNTKAELSEYFTQLNEVPWRDCY
HCCCCCEEEEHHHHCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHCC
RPNFFVNTPDINPRFLHESGRPGFLIRAALATMGSGLWGMYSGFELCEAAPIPGKEEYLD
CCCEEEECCCCCHHEECCCCCCCHHHHHHHHHHCCCHHHHHCCHHHHHCCCCCCHHHHCC
SEKYQIRVRDYAAPGNIIAEIAQLNRIRRQNPALQTHLGLKLYNAWNDNILYFGKRSADG
CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCCEEEEECCCCCC
SNFILVAVNLDPYNAQEADFELPLWEMGLPDDAATSGEDLMTGHRWTWYGKYQHTRLDPS
CCEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCEEEEEECEEECCCCCC
QPFGIWRIQAAQ
CCCCEEEEEECC
>Mature Secondary Structure
MNEQPYGPDSLATDVPQATLPLSLTQALQLPRIVIEDTLPVIDGGLFAAKAIIGQPVTVT
CCCCCCCCCHHHHCCCCCCCCHHHHHHHHCCCEEECCCCCHHCCHHHHHHHHHCCCEEEE
SKVYADGHDKMAVNIRWRAADEEHWHSAPMRELGNDSWVGEFTPTSVSRHVFRLEAWIDQ
EEEEECCCCEEEEEEEEEECCHHHHCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHH
FGSYRYELEKKFGAGVPVDLELEEGRIHLVHAAERSQNEQRQQIEGLLGQLEQGDKDEKV
HCCCEEEHHHHHCCCCCEEEEECCCEEEEEECHHHCCHHHHHHHHHHHHHHHCCCCCCEE
ALLLHSETASLMKLADNQAFLSRSVEFPLDVERELAQFASWYELFPRSMTDDPARHGTFN
EEEEECCHHHHHHHHCCHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
DVHSRLPIIRDMGFDVLYFPPIHPIGRAHRKGPNNSLTAGPDDPGSPYAIGSEDGGHEAI
HHHHCCCHHHHCCCCEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCCEEECCCCCCCCCC
HPQLGSREDFRHLVKAAAEHGLEIALDFAIQCSQDHPWLKQHPGWFSWRPDGTIRYAENP
CCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCHHHHCCCCEEECCCCEEEECCCC
PKKYQDIVNVDFYAPDAIPGLWTELRDIVLGWVNEGVKIFRVDNPHTKPLPFWQWMIGEV
CHHHHHHEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHH
RSQHPEVMFLAEAFTKPAMMARLGKVGYSQSYTYFTWRNTKAELSEYFTQLNEVPWRDCY
HCCCCCEEEEHHHHCCHHHHHHHHHCCCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHCC
RPNFFVNTPDINPRFLHESGRPGFLIRAALATMGSGLWGMYSGFELCEAAPIPGKEEYLD
CCCEEEECCCCCHHEECCCCCCCHHHHHHHHHHCCCHHHHHCCHHHHHCCCCCCHHHHCC
SEKYQIRVRDYAAPGNIIAEIAQLNRIRRQNPALQTHLGLKLYNAWNDNILYFGKRSADG
CCCEEEEEEECCCCHHHHHHHHHHHHHHHCCCCHHHHCCEEEEECCCCCEEEEECCCCCC
SNFILVAVNLDPYNAQEADFELPLWEMGLPDDAATSGEDLMTGHRWTWYGKYQHTRLDPS
CCEEEEEEECCCCCCCCCCCCCCCEECCCCCCCCCCCCHHHCCCEEEEEECEEECCCCCC
QPFGIWRIQAAQ
CCCCEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10970853 [H]