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The map label for this gene is yciR [C]

Identifier: 66045722

GI number: 66045722

Start: 2888620

End: 2890731

Strand: Direct

Name: yciR [C]

Synonym: Psyr_2486

Alternate gene names: 66045722

Gene position: 2888620-2890731 (Clockwise)

Preceding gene: 66045721

Following gene: 66045723

Centisome position: 47.4

GC content: 59.99

Gene sequence:

>2112_bases
ATGTTGATTGGCAGCTACATCCCCTCACTCGTCGTCATCTCGATTCTCGTCGCTATTCTTGCCGCCTATACGGCCCTCGA
TCTGGTTGGCCGCATCGTTTCGGCCAGGGGCCGTGCCGTTCACCTATGGATCGCGGGAGGCGCTGTCGCGATGGGCGTCG
GCACCTGGTCGACGCATTTCATCGGTATGCTGGCGTTCGTATTGCCCATCGACCTGGGCTACGACGTGCCACTGGTGCTG
CTTTCGCTGTTGATCGCCATCGGCTTTTCAGGGTTCGCCCTGTGGCTCGCCACTCTGCCGCGATTGCCGGCACTGCAACT
GAGCCTGGGGTCGCTGTTACTGGGGCTTGGCATCAGCGCCACGCATTACACCGGCATGGCGGCAATGCGTATGCAGCCGG
GCATCCAGTACACGCCGTGGCTGTTCGCGCTTTCGTTGGTCACTGCTGTCGTTGCATCCGCAGCAGCATTGCGCGTGGCC
TTCCACCTTCGTCAGCAACGCCCGAGAGTCTACGTGTTGCGCGCCTCGGCGGCGCTGTTGCTGGGGCTGGCTGTCATCGG
CATGCATTACACCGGTATGGCCGCCGCGAATTTTGCCGATGGCAGCTTTTGTGGTGCGCTGCCCCAAGGGTTGAGCAGTA
ACGGGCTGGACAGATTCGTGCTGGTCGCCAGCCTGTCGATTCTGGGGATTGCGCTGTTCAGCTGTATTCTCGATTCGCAT
CTGGAAACACGTACCGCCGTGCTGGCCGATTCTCTGACGCAAGCCAATCTGGAACTGACCCACCTGGCCCTGCATGACAA
CCTGACCGGTTTGCCAAACCGGGCGTTGTTGACCGAACGCATCGATCAGGCAATGAAGAGGGCCACCGAGACGGGTGGCT
GCTTTGCGCTGATGTTCATGGACCTCGATGGCTTCAAACCGGTCAATGACGCGTTCGGGCACCACACCGGCGACCTGCTG
TTGCGGCAGGTCGCCTTGCGTCTTCGCAACAGCCTGCACCGTCGCGACACGCTGGCCAGAGTCGGCGGTGACGAGTTTGT
CCTGCTGGTGGAGCTTCAACACCCTGAGGATGCATTGGCCGTTGCCAGACGACAGGTCAACGAAGTCGGCAACCCGTTTA
TCATTGGCGAACATCAGTTGCAGATTTCCCTCAGCATCGGCATCTGCGTGTATCCGGGCAATGGCAGCACCCAGCATGAG
CTTCTGATCAATGCCGACGCCGCCATGTACCACACCAAGGCGGCCGGCAAGAACGGCTACAGCTTTTTCGATGTGTCGAT
GAACAGTAACGCCCGCAATCAGTTGCAGATGTCGCAGGATTTGCACAAGGCGATCAAGCACCGGCAGTTCTGTATCTATT
ACCAGCCCAAGTTCGACGCGATGACCGGACTGCCCGTAGGCGCAGAAGCGTTGCTGCGCTGGAATCATCCGAAACAGGGC
GTCCTTGGGCCGGACCTGTTCATTTCCATGGCGGAGAAGACCGGCCTGATCATTCAGATCGGCGAGTGGGTGCTGGACGA
AGCCTGTCGGCAAATGCGTGAGTGGTACACCCAGGGCTACTCGCACTGGCGCATTGCAGTCAATCTGTCAGCCTTGCAGT
TCTGTCATGCCGGGCTGGTTACGGCAGTGGCGGATACACTGGCCCGGCATCAGTTGCCGGCCAACTGCCTGACCCTGGAA
ATCACCGAGACCACGGCCATGCATGATGCGGATGCCAGCCTGGCGGTGTTGCGAAGGCTTTCGGAAATGGGCGTGGACCT
GTCGATCGATGATTTTGGCACCGGTTACTCCAGCCTGATGTACCTGAAACGACTGCCCGCCAATGAAATCAAGATTGATC
GGGGCTTCGTCCGCGACCTGGAGCATGACACCGACGACGCCGCCATCGTCTCGGCCATCGTCGCGGTAGGGCAGGCGTTG
AATCTGCGGATCGTCGCCGAGGGCGTCGAAACCGCTGTTCAGCAGCGCTTCCTGACTCACCTGGGATGTCACTCGCTGCA
AGGCTTCCTGCTGGGTTATCCGTTACCGGCCGAGCAGTTTCTCGAAGAAATCCGCGCCGCCGAAGCGAAAGCTGCAGTGG
AAGCGTCCGATACCGGGCAAGCGGCTTTCTGA

Upstream 100 bases:

>100_bases
GCCAGCTTTGCGACCAAGTGCCGCGACATTCGGCCGCTAATGCGTACAATCACCCGCACAAGATCGGCATGGACGCGCTC
ATTGGTTTCCAGGTGCGTTT

Downstream 100 bases:

>100_bases
CGCGCGCAGATGGCGCTGGACGATAAAGGCTGTCACGATCCGAACCGGCTGGTTAACCTGCGAAGGTTGGCTGGATCCTG
ATGTAGGCCTTTGAAAAAAA

Product: GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 703; Mature: 703

Protein sequence:

>703_residues
MLIGSYIPSLVVISILVAILAAYTALDLVGRIVSARGRAVHLWIAGGAVAMGVGTWSTHFIGMLAFVLPIDLGYDVPLVL
LSLLIAIGFSGFALWLATLPRLPALQLSLGSLLLGLGISATHYTGMAAMRMQPGIQYTPWLFALSLVTAVVASAAALRVA
FHLRQQRPRVYVLRASAALLLGLAVIGMHYTGMAAANFADGSFCGALPQGLSSNGLDRFVLVASLSILGIALFSCILDSH
LETRTAVLADSLTQANLELTHLALHDNLTGLPNRALLTERIDQAMKRATETGGCFALMFMDLDGFKPVNDAFGHHTGDLL
LRQVALRLRNSLHRRDTLARVGGDEFVLLVELQHPEDALAVARRQVNEVGNPFIIGEHQLQISLSIGICVYPGNGSTQHE
LLINADAAMYHTKAAGKNGYSFFDVSMNSNARNQLQMSQDLHKAIKHRQFCIYYQPKFDAMTGLPVGAEALLRWNHPKQG
VLGPDLFISMAEKTGLIIQIGEWVLDEACRQMREWYTQGYSHWRIAVNLSALQFCHAGLVTAVADTLARHQLPANCLTLE
ITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEIKIDRGFVRDLEHDTDDAAIVSAIVAVGQAL
NLRIVAEGVETAVQQRFLTHLGCHSLQGFLLGYPLPAEQFLEEIRAAEAKAAVEASDTGQAAF

Sequences:

>Translated_703_residues
MLIGSYIPSLVVISILVAILAAYTALDLVGRIVSARGRAVHLWIAGGAVAMGVGTWSTHFIGMLAFVLPIDLGYDVPLVL
LSLLIAIGFSGFALWLATLPRLPALQLSLGSLLLGLGISATHYTGMAAMRMQPGIQYTPWLFALSLVTAVVASAAALRVA
FHLRQQRPRVYVLRASAALLLGLAVIGMHYTGMAAANFADGSFCGALPQGLSSNGLDRFVLVASLSILGIALFSCILDSH
LETRTAVLADSLTQANLELTHLALHDNLTGLPNRALLTERIDQAMKRATETGGCFALMFMDLDGFKPVNDAFGHHTGDLL
LRQVALRLRNSLHRRDTLARVGGDEFVLLVELQHPEDALAVARRQVNEVGNPFIIGEHQLQISLSIGICVYPGNGSTQHE
LLINADAAMYHTKAAGKNGYSFFDVSMNSNARNQLQMSQDLHKAIKHRQFCIYYQPKFDAMTGLPVGAEALLRWNHPKQG
VLGPDLFISMAEKTGLIIQIGEWVLDEACRQMREWYTQGYSHWRIAVNLSALQFCHAGLVTAVADTLARHQLPANCLTLE
ITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEIKIDRGFVRDLEHDTDDAAIVSAIVAVGQAL
NLRIVAEGVETAVQQRFLTHLGCHSLQGFLLGYPLPAEQFLEEIRAAEAKAAVEASDTGQAAF
>Mature_703_residues
MLIGSYIPSLVVISILVAILAAYTALDLVGRIVSARGRAVHLWIAGGAVAMGVGTWSTHFIGMLAFVLPIDLGYDVPLVL
LSLLIAIGFSGFALWLATLPRLPALQLSLGSLLLGLGISATHYTGMAAMRMQPGIQYTPWLFALSLVTAVVASAAALRVA
FHLRQQRPRVYVLRASAALLLGLAVIGMHYTGMAAANFADGSFCGALPQGLSSNGLDRFVLVASLSILGIALFSCILDSH
LETRTAVLADSLTQANLELTHLALHDNLTGLPNRALLTERIDQAMKRATETGGCFALMFMDLDGFKPVNDAFGHHTGDLL
LRQVALRLRNSLHRRDTLARVGGDEFVLLVELQHPEDALAVARRQVNEVGNPFIIGEHQLQISLSIGICVYPGNGSTQHE
LLINADAAMYHTKAAGKNGYSFFDVSMNSNARNQLQMSQDLHKAIKHRQFCIYYQPKFDAMTGLPVGAEALLRWNHPKQG
VLGPDLFISMAEKTGLIIQIGEWVLDEACRQMREWYTQGYSHWRIAVNLSALQFCHAGLVTAVADTLARHQLPANCLTLE
ITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLMYLKRLPANEIKIDRGFVRDLEHDTDDAAIVSAIVAVGQAL
NLRIVAEGVETAVQQRFLTHLGCHSLQGFLLGYPLPAEQFLEEIRAAEAKAAVEASDTGQAAF

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=427, Percent_Identity=39.1100702576112, Blast_Score=298, Evalue=8e-82,
Organism=Escherichia coli, GI87081921, Length=435, Percent_Identity=36.0919540229885, Blast_Score=254, Evalue=1e-68,
Organism=Escherichia coli, GI226510982, Length=424, Percent_Identity=33.2547169811321, Blast_Score=231, Evalue=2e-61,
Organism=Escherichia coli, GI87081980, Length=260, Percent_Identity=34.2307692307692, Blast_Score=157, Evalue=2e-39,
Organism=Escherichia coli, GI1790496, Length=260, Percent_Identity=32.6923076923077, Blast_Score=149, Evalue=6e-37,
Organism=Escherichia coli, GI1786507, Length=270, Percent_Identity=31.4814814814815, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI87081743, Length=241, Percent_Identity=34.8547717842324, Blast_Score=146, Evalue=5e-36,
Organism=Escherichia coli, GI1788502, Length=254, Percent_Identity=31.496062992126, Blast_Score=141, Evalue=1e-34,
Organism=Escherichia coli, GI1788849, Length=468, Percent_Identity=25.4273504273504, Blast_Score=141, Evalue=2e-34,
Organism=Escherichia coli, GI87081845, Length=238, Percent_Identity=32.3529411764706, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87082096, Length=427, Percent_Identity=26.2295081967213, Blast_Score=119, Evalue=5e-28,
Organism=Escherichia coli, GI1787055, Length=441, Percent_Identity=24.4897959183673, Blast_Score=118, Evalue=1e-27,
Organism=Escherichia coli, GI1788381, Length=432, Percent_Identity=26.6203703703704, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693134, Length=163, Percent_Identity=31.9018404907975, Blast_Score=88, Evalue=2e-18,
Organism=Escherichia coli, GI1787816, Length=162, Percent_Identity=34.5679012345679, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI87081977, Length=190, Percent_Identity=32.1052631578947, Blast_Score=82, Evalue=1e-16,
Organism=Escherichia coli, GI1787262, Length=172, Percent_Identity=33.7209302325581, Blast_Score=82, Evalue=2e-16,
Organism=Escherichia coli, GI1788956, Length=164, Percent_Identity=35.3658536585366, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI87082007, Length=160, Percent_Identity=35, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI87081881, Length=175, Percent_Identity=32.5714285714286, Blast_Score=77, Evalue=5e-15,
Organism=Escherichia coli, GI1786584, Length=180, Percent_Identity=31.6666666666667, Blast_Score=76, Evalue=8e-15,
Organism=Escherichia coli, GI1787802, Length=183, Percent_Identity=28.4153005464481, Blast_Score=75, Evalue=1e-14,
Organism=Escherichia coli, GI87081974, Length=161, Percent_Identity=29.1925465838509, Blast_Score=74, Evalue=4e-14,
Organism=Escherichia coli, GI1788085, Length=165, Percent_Identity=27.8787878787879, Blast_Score=68, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 76201; Mature: 76201

Theoretical pI: Translated: 6.61; Mature: 6.61

Prosite motif: PS50924 MHYT ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIGSYIPSLVVISILVAILAAYTALDLVGRIVSARGRAVHLWIAGGAVAMGVGTWSTHF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCHHHHH
IGMLAFVLPIDLGYDVPLVLLSLLIAIGFSGFALWLATLPRLPALQLSLGSLLLGLGISA
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
THYTGMAAMRMQPGIQYTPWLFALSLVTAVVASAAALRVAFHLRQQRPRVYVLRASAALL
HHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
LGLAVIGMHYTGMAAANFADGSFCGALPQGLSSNGLDRFVLVASLSILGIALFSCILDSH
HHHHHHHHHHCCCEECCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LETRTAVLADSLTQANLELTHLALHDNLTGLPNRALLTERIDQAMKRATETGGCFALMFM
HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEE
DLDGFKPVNDAFGHHTGDLLLRQVALRLRNSLHRRDTLARVGGDEFVLLVELQHPEDALA
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHH
VARRQVNEVGNPFIIGEHQLQISLSIGICVYPGNGSTQHELLINADAAMYHTKAAGKNGY
HHHHHHHHCCCCEEEECEEEEEEEEEEEEEECCCCCCCEEEEEECCHHHHEECCCCCCCC
SFFDVSMNSNARNQLQMSQDLHKAIKHRQFCIYYQPKFDAMTGLPVGAEALLRWNHPKQG
EEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCC
VLGPDLFISMAEKTGLIIQIGEWVLDEACRQMREWYTQGYSHWRIAVNLSALQFCHAGLV
CCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHH
TAVADTLARHQLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLM
HHHHHHHHHHCCCCCEEEEEEECCHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHHH
YLKRLPANEIKIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTH
HHHHCCCCCEEECHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH
LGCHSLQGFLLGYPLPAEQFLEEIRAAEAKAAVEASDTGQAAF
HCHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC
>Mature Secondary Structure
MLIGSYIPSLVVISILVAILAAYTALDLVGRIVSARGRAVHLWIAGGAVAMGVGTWSTHF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCEEEEECCCHHHHH
IGMLAFVLPIDLGYDVPLVLLSLLIAIGFSGFALWLATLPRLPALQLSLGSLLLGLGISA
HHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCH
THYTGMAAMRMQPGIQYTPWLFALSLVTAVVASAAALRVAFHLRQQRPRVYVLRASAALL
HHHHCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHH
LGLAVIGMHYTGMAAANFADGSFCGALPQGLSSNGLDRFVLVASLSILGIALFSCILDSH
HHHHHHHHHHCCCEECCCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
LETRTAVLADSLTQANLELTHLALHDNLTGLPNRALLTERIDQAMKRATETGGCFALMFM
HHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEE
DLDGFKPVNDAFGHHTGDLLLRQVALRLRNSLHRRDTLARVGGDEFVLLVELQHPEDALA
CCCCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHH
VARRQVNEVGNPFIIGEHQLQISLSIGICVYPGNGSTQHELLINADAAMYHTKAAGKNGY
HHHHHHHHCCCCEEEECEEEEEEEEEEEEEECCCCCCCEEEEEECCHHHHEECCCCCCCC
SFFDVSMNSNARNQLQMSQDLHKAIKHRQFCIYYQPKFDAMTGLPVGAEALLRWNHPKQG
EEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCHHHHHCCCCCCCC
VLGPDLFISMAEKTGLIIQIGEWVLDEACRQMREWYTQGYSHWRIAVNLSALQFCHAGLV
CCCHHHHHHHHHCCCEEEEEHHHHHHHHHHHHHHHHHCCCCEEEEEEEHHHHHHHHHHHH
TAVADTLARHQLPANCLTLEITETTAMHDADASLAVLRRLSEMGVDLSIDDFGTGYSSLM
HHHHHHHHHHCCCCCEEEEEEECCHHCCCCCHHHHHHHHHHHCCCCEEECCCCCCHHHHH
YLKRLPANEIKIDRGFVRDLEHDTDDAAIVSAIVAVGQALNLRIVAEGVETAVQQRFLTH
HHHHCCCCCEEECHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHH
LGCHSLQGFLLGYPLPAEQFLEEIRAAEAKAAVEASDTGQAAF
HCHHHHCHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]