Click here to switch to the map view.

The map label for this gene is ycjN [C]

Identifier: 66045676

GI number: 66045676

Start: 2824960

End: 2826282

Strand: Reverse

Name: ycjN [C]

Synonym: Psyr_2440

Alternate gene names: 66045676

Gene position: 2826282-2824960 (Counterclockwise)

Preceding gene: 66045677

Following gene: 66045675

Centisome position: 46.38

GC content: 58.73

Gene sequence:

>1323_bases
ATGAAGAACTCAGCAAAACTTCTGCTCGCCAGTTCCGTCCTCAGCACCTGTTTCGTGTTCAGTGGCAGTGCCACCGCGGG
GACCGTGACCATCGCCACGGTCAACAACAGCGACATGATTCGCATGCAACGCCTCTCCAAGACCTTCGAAGAAAAGCACC
CCGATATCAAGCTCAATTGGGTCGTGCTGGAAGAGAACGTCCTGCGTCAACGCCTGACCACCGACATCGCCACCAAGGGC
GGCCAGTTCGACGTGCTGACCATCGGCATGTACGAAGCCTCACTCTGGGGTCAGAAAGGCTGGCTGCAGGAAATGAAAGA
CCTGCCTGACAGCTACGATCTGAAGGATGTGTTCACATCAGTACGCGACGGCCTGTCGGTGGACGACAAACTGTTTGCCC
TGCCGTTCTATGCTGAAGCCTCGATCACCTACTACCGCACCGACCTGTTCAAGGCCGCAGGCCTGACCATGCCCGAGCGC
CCTACCTGGACCCAGATCGCCGGGTTCGCCGAGAAACTGACCGACAAGTCCAAGGAACAGTACGGCCTGTGTCTGCGCGG
CAAGGCTGGCTGGGGCGAGAACATGGCGCTGATCACCACGCTGGCCAACGCCTATGGCGGACGCTGGTTCGATGAGCAGT
GGACGCCACAGTTCGATCAGCCAGAATGGAAGGATGCGCTGAACTTCTACGTCAATACCATGAAGAAATTTGGCCCGCCG
GGTGCCTCAAGTAACGGTTTCAACGAGAACCTTGCGCTGTTCAACAGCGGCAAATGCGCCATCTGGGTGGATGCCAGCGT
GGCCGGTTCGTTCGTGACCGACAAGAAGCAGAGCAAAGTGGCTGACAGCGTCGGCTTCACCTACGCCCCGCACGAAGTGA
CCGACAAGGGCTCGTCGTGGCTGTACTCGTGGTCGCTGGCGATCCCGACCAGCGCCAAGAACACCAAGGACGCTGCCGAG
TTCACCCAGTGGGCGACCTCGAAAGAGTACGCCAAATTGGTCGCCGATACCGACGGCGTGTCCAACGTACCGCCGGGCAC
CCGCGCCTCGACCTACACCGACGAATACAAAAAGGCAGCACCGTTTGCCAACATCACGCTTGAGTCGTTGAAGAAGGCCG
ATCCCAAGTCGCCAACCCTCAAACCCGTGCCTTACGTCGGCATTCAACTGGTCACCATTCCCGAGTTCCAGGCCATCGGC
ACCAGCGTCGGTCAGCAGTTCTCTGCAGCACTCATAGGTCAGTCCACTGTGGATCAGGCCTTGCAGAATGCGCAAACCGC
TACCGCGCGCGACATGAAACGAGCGGGTTACCCGAAAAAGTAA

Upstream 100 bases:

>100_bases
GAACGCCGGTGTAATCAATGCACATCTTCCTCACCTCCGGAAGAGAAAAAAACAATAACCATCCTTCTGCAGTCCTTTGG
GCGTGGAAGAGGAGTGATCA

Downstream 100 bases:

>100_bases
CCGTCACGCATCAGGGCGAAAGCCAATGCTCTCGCCCTGCCGCTCAACTGCGCAACAACTCTGGTGCAATCCGGTTCGGA
GCTCCCCATGAATACCTCAG

Product: extracellular solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 440; Mature: 440

Protein sequence:

>440_residues
MKNSAKLLLASSVLSTCFVFSGSATAGTVTIATVNNSDMIRMQRLSKTFEEKHPDIKLNWVVLEENVLRQRLTTDIATKG
GQFDVLTIGMYEASLWGQKGWLQEMKDLPDSYDLKDVFTSVRDGLSVDDKLFALPFYAEASITYYRTDLFKAAGLTMPER
PTWTQIAGFAEKLTDKSKEQYGLCLRGKAGWGENMALITTLANAYGGRWFDEQWTPQFDQPEWKDALNFYVNTMKKFGPP
GASSNGFNENLALFNSGKCAIWVDASVAGSFVTDKKQSKVADSVGFTYAPHEVTDKGSSWLYSWSLAIPTSAKNTKDAAE
FTQWATSKEYAKLVADTDGVSNVPPGTRASTYTDEYKKAAPFANITLESLKKADPKSPTLKPVPYVGIQLVTIPEFQAIG
TSVGQQFSAALIGQSTVDQALQNAQTATARDMKRAGYPKK

Sequences:

>Translated_440_residues
MKNSAKLLLASSVLSTCFVFSGSATAGTVTIATVNNSDMIRMQRLSKTFEEKHPDIKLNWVVLEENVLRQRLTTDIATKG
GQFDVLTIGMYEASLWGQKGWLQEMKDLPDSYDLKDVFTSVRDGLSVDDKLFALPFYAEASITYYRTDLFKAAGLTMPER
PTWTQIAGFAEKLTDKSKEQYGLCLRGKAGWGENMALITTLANAYGGRWFDEQWTPQFDQPEWKDALNFYVNTMKKFGPP
GASSNGFNENLALFNSGKCAIWVDASVAGSFVTDKKQSKVADSVGFTYAPHEVTDKGSSWLYSWSLAIPTSAKNTKDAAE
FTQWATSKEYAKLVADTDGVSNVPPGTRASTYTDEYKKAAPFANITLESLKKADPKSPTLKPVPYVGIQLVTIPEFQAIG
TSVGQQFSAALIGQSTVDQALQNAQTATARDMKRAGYPKK
>Mature_440_residues
MKNSAKLLLASSVLSTCFVFSGSATAGTVTIATVNNSDMIRMQRLSKTFEEKHPDIKLNWVVLEENVLRQRLTTDIATKG
GQFDVLTIGMYEASLWGQKGWLQEMKDLPDSYDLKDVFTSVRDGLSVDDKLFALPFYAEASITYYRTDLFKAAGLTMPER
PTWTQIAGFAEKLTDKSKEQYGLCLRGKAGWGENMALITTLANAYGGRWFDEQWTPQFDQPEWKDALNFYVNTMKKFGPP
GASSNGFNENLALFNSGKCAIWVDASVAGSFVTDKKQSKVADSVGFTYAPHEVTDKGSSWLYSWSLAIPTSAKNTKDAAE
FTQWATSKEYAKLVADTDGVSNVPPGTRASTYTDEYKKAAPFANITLESLKKADPKSPTLKPVPYVGIQLVTIPEFQAIG
TSVGQQFSAALIGQSTVDQALQNAQTATARDMKRAGYPKK

Specific function: Probably part of the binding-protein-dependent transport system y4oPQRS. This system probably transports a sugar-like molecule [H]

COG id: COG1653

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 48412; Mature: 48412

Theoretical pI: Translated: 7.99; Mature: 7.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSAKLLLASSVLSTCFVFSGSATAGTVTIATVNNSDMIRMQRLSKTFEEKHPDIKLNW
CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
VVLEENVLRQRLTTDIATKGGQFDVLTIGMYEASLWGQKGWLQEMKDLPDSYDLKDVFTS
EEECHHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHCCCHHHHHHHHCCCCCCCHHHHHHH
VRDGLSVDDKLFALPFYAEASITYYRTDLFKAAGLTMPERPTWTQIAGFAEKLTDKSKEQ
HHCCCCCCCEEEEEEEEECCEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHH
YGLCLRGKAGWGENMALITTLANAYGGRWFDEQWTPQFDQPEWKDALNFYVNTMKKFGPP
CCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
GASSNGFNENLALFNSGKCAIWVDASVAGSFVTDKKQSKVADSVGFTYAPHEVTDKGSSW
CCCCCCCCCCEEEEECCCEEEEEECCCCCCHHCCCHHHHHHHHCCCEECCCHHCCCCCCE
LYSWSLAIPTSAKNTKDAAEFTQWATSKEYAKLVADTDGVSNVPPGTRASTYTDEYKKAA
EEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHC
PFANITLESLKKADPKSPTLKPVPYVGIQLVTIPEFQAIGTSVGQQFSAALIGQSTVDQA
CCHHCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LQNAQTATARDMKRAGYPKK
HHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MKNSAKLLLASSVLSTCFVFSGSATAGTVTIATVNNSDMIRMQRLSKTFEEKHPDIKLNW
CCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEE
VVLEENVLRQRLTTDIATKGGQFDVLTIGMYEASLWGQKGWLQEMKDLPDSYDLKDVFTS
EEECHHHHHHHHHHHHHCCCCCEEEEEEEEEEHHHCCCHHHHHHHHCCCCCCCHHHHHHH
VRDGLSVDDKLFALPFYAEASITYYRTDLFKAAGLTMPERPTWTQIAGFAEKLTDKSKEQ
HHCCCCCCCEEEEEEEEECCEEEEEHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHH
YGLCLRGKAGWGENMALITTLANAYGGRWFDEQWTPQFDQPEWKDALNFYVNTMKKFGPP
CCEEEECCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCC
GASSNGFNENLALFNSGKCAIWVDASVAGSFVTDKKQSKVADSVGFTYAPHEVTDKGSSW
CCCCCCCCCCEEEEECCCEEEEEECCCCCCHHCCCHHHHHHHHCCCEECCCHHCCCCCCE
LYSWSLAIPTSAKNTKDAAEFTQWATSKEYAKLVADTDGVSNVPPGTRASTYTDEYKKAA
EEEEEEECCCCCCCCHHHHHHHHHHCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHC
PFANITLESLKKADPKSPTLKPVPYVGIQLVTIPEFQAIGTSVGQQFSAALIGQSTVDQA
CCHHCCHHHHHCCCCCCCCCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
LQNAQTATARDMKRAGYPKK
HHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]