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The map label for this gene is nudF [H]

Identifier: 66045640

GI number: 66045640

Start: 2785952

End: 2786515

Strand: Reverse

Name: nudF [H]

Synonym: Psyr_2404

Alternate gene names: 66045640

Gene position: 2786515-2785952 (Counterclockwise)

Preceding gene: 66045641

Following gene: 66045638

Centisome position: 45.73

GC content: 59.75

Gene sequence:

>564_bases
ATGGCCACACCGCGCTTCTGTCCCCAATGCGGTAGCGCTGATCTGGTTCAGCGTGTGCCGTCGGGCGATACGCATGTGCG
GTTGGTCTGTGGCGGCTGTCAGTACATTCACTACGTCAATCCGAAGATCATCGCGGGTTGCATCATCGAGCAGGAAGGCA
AGTACCTGCTCTGCCAGCGTGCCATCCCGCCGCGCCCCGGCACCTGGACACTGCCTGCCGGTTTCATGGAAAGCGGTGAA
ACCACCGAGCAGGCGGCGCTGCGTGAAGTCTGGGAAGAAACCGGTGTACGCGCCGAGATCCTTTCGCCCTACTCCATTTT
CAGCGTGCCGCGCATCAGCGAAGTCTACATCGTGTTCCGTGCCATCGCGCTGGAGGTGACCGGCCAGTTCGGCCCGGAAA
CCCTGGACTACAGATTCTTCGCCGCCGAAGACATCCCGTGGGACAGCATCTATTACCCCGCTATCCGGCAGATACTGGAA
CGCTATATCGAAGAGCGTCAGGCCGGTGTCTACGGTATTTATATCGGCAACGACGACACCGGCAAGGTGCACTTTATCCG
GTGA

Upstream 100 bases:

>100_bases
GTGGCGCTGGAATACCTCAAATCCAAGCAGGATGAAGTCAGCAAAGTCCGCGACATCGTCGCCCCCGTCGCGCTGAAAGA
ACCTCGCATAGGTCGCTGAA

Downstream 100 bases:

>100_bases
ACGCCTGAAGCTTTCAGCTCGCCACTGAACGTCTAAAACTGCCCCTCGACGATCACGATCTCGGCCTTGGAAGCGCCCTG
CCTGTGGCTCATCGCATTCT

Product: NUDIX hydrolase

Products: NA

Alternate protein names: ADP-ribose diphosphatase; ADP-ribose phosphohydrolase; Adenosine diphosphoribose pyrophosphatase; ADPR-PPase [H]

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MATPRFCPQCGSADLVQRVPSGDTHVRLVCGGCQYIHYVNPKIIAGCIIEQEGKYLLCQRAIPPRPGTWTLPAGFMESGE
TTEQAALREVWEETGVRAEILSPYSIFSVPRISEVYIVFRAIALEVTGQFGPETLDYRFFAAEDIPWDSIYYPAIRQILE
RYIEERQAGVYGIYIGNDDTGKVHFIR

Sequences:

>Translated_187_residues
MATPRFCPQCGSADLVQRVPSGDTHVRLVCGGCQYIHYVNPKIIAGCIIEQEGKYLLCQRAIPPRPGTWTLPAGFMESGE
TTEQAALREVWEETGVRAEILSPYSIFSVPRISEVYIVFRAIALEVTGQFGPETLDYRFFAAEDIPWDSIYYPAIRQILE
RYIEERQAGVYGIYIGNDDTGKVHFIR
>Mature_186_residues
ATPRFCPQCGSADLVQRVPSGDTHVRLVCGGCQYIHYVNPKIIAGCIIEQEGKYLLCQRAIPPRPGTWTLPAGFMESGET
TEQAALREVWEETGVRAEILSPYSIFSVPRISEVYIVFRAIALEVTGQFGPETLDYRFFAAEDIPWDSIYYPAIRQILER
YIEERQAGVYGIYIGNDDTGKVHFIR

Specific function: Unknown

COG id: COG1051

COG function: function code F; ADP-ribose pyrophosphatase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 nudix hydrolase domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020476
- InterPro:   IPR020084
- InterPro:   IPR000086
- InterPro:   IPR015797 [H]

Pfam domain/function: PF00293 NUDIX [H]

EC number: =3.6.1.13 [H]

Molecular weight: Translated: 21114; Mature: 20983

Theoretical pI: Translated: 4.87; Mature: 4.87

Prosite motif: PS00893 NUDIX

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.2 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
3.2 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATPRFCPQCGSADLVQRVPSGDTHVRLVCGGCQYIHYVNPKIIAGCIIEQEGKYLLCQR
CCCCCCCCCCCCHHHHHHCCCCCCEEEEEECCEEEEEEECCCEEEEEEEECCCCEEEEEC
AIPPRPGTWTLPAGFMESGETTEQAALREVWEETGVRAEILSPYSIFSVPRISEVYIVFR
CCCCCCCCEECCCHHHCCCCCHHHHHHHHHHHHHCCEEEEECCHHHHCCCCHHHHHHHHH
AIALEVTGQFGPETLDYRFFAAEDIPWDSIYYPAIRQILERYIEERQAGVYGIYIGNDDT
HHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
GKVHFIR
CEEEEEC
>Mature Secondary Structure 
ATPRFCPQCGSADLVQRVPSGDTHVRLVCGGCQYIHYVNPKIIAGCIIEQEGKYLLCQR
CCCCCCCCCCCHHHHHHCCCCCCEEEEEECCEEEEEEECCCEEEEEEEECCCCEEEEEC
AIPPRPGTWTLPAGFMESGETTEQAALREVWEETGVRAEILSPYSIFSVPRISEVYIVFR
CCCCCCCCEECCCHHHCCCCCHHHHHHHHHHHHHCCEEEEECCHHHHCCCCHHHHHHHHH
AIALEVTGQFGPETLDYRFFAAEDIPWDSIYYPAIRQILERYIEERQAGVYGIYIGNDDT
HHHHHCCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCC
GKVHFIR
CEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087; 9694840 [H]