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The map label for this gene is ydhC [H]

Identifier: 66045641

GI number: 66045641

Start: 2786517

End: 2787269

Strand: Reverse

Name: ydhC [H]

Synonym: Psyr_2405

Alternate gene names: 66045641

Gene position: 2787269-2786517 (Counterclockwise)

Preceding gene: 66045642

Following gene: 66045640

Centisome position: 45.74

GC content: 61.75

Gene sequence:

>753_bases
ATGAAACGCCTGCCTCTCGACGACACCTTCAAGGTCAACCGCAACCCCGTCACGCTGCGCGAGATCGTGCTGGACAAGCT
GCGCAGCGCAATCATGAACTTTCAGCTGCTGCCGGGTGACCGTCTGGTCGAGCGTGATCTGTGTGACCGCCTCGGCGTGA
GCCGCACCTCGGTGCGCGAAGCACTGCGCCACCTGGAATCCGAAGGTCTGGTCGAGTTCGCCGATGCCAAGGGCCCGCGC
GTTGCCATCATCACGCTGGCTGACGCGTGCGATATCTACGAACTACGCTGCGTGCTCGAAGGCCTGATCGTTCAGCTGTT
TACCCTGCGGGCCAAACCCAAGGACATTCGCGCACTGGAAAAAGCCCTGGAGGAAAATCGTCAGGCGCTCAAGGAAGGCG
AACTGCAGCAGGTGATCGACTCGGTCCAGGGTTTCTACGATGTACTGCTGGAAGGCTCGGGCAACCATGTGGCCGCGACC
CAGCTACGCCAGTTGCAGGCGCGCATCAGCTACCTGCGCGCCACCTCGGTATCCCAGGAAAACCGCCGCGGTGCCAGCAA
CAAGGAAATGGAGCTCATGGTCGAAGCGATCAAGAGCGGCGACCCGCTGGCCGCGCATCAGGCGTCGGTCGATCACGTAC
GCAACGCCGCACGCGTGGCGCTGGAATACCTCAAATCCAAGCAGGATGAAGTCAGCAAAGTCCGCGACATCGTCGCCCCC
GTCGCGCTGAAAGAACCTCGCATAGGTCGCTGA

Upstream 100 bases:

>100_bases
GGCCATGCAGCAGCCCGCGCAGTGTGCGGGTTGCCGACATGAGCGAGACTTTATTTCCAGTCACGTTTTTACTTTGACAG
CCCCATTCCGAGCACACCCG

Downstream 100 bases:

>100_bases
AATGGCCACACCGCGCTTCTGTCCCCAATGCGGTAGCGCTGATCTGGTTCAGCGTGTGCCGTCGGGCGATACGCATGTGC
GGTTGGTCTGTGGCGGCTGT

Product: transcriptional regulator GntR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 250; Mature: 250

Protein sequence:

>250_residues
MKRLPLDDTFKVNRNPVTLREIVLDKLRSAIMNFQLLPGDRLVERDLCDRLGVSRTSVREALRHLESEGLVEFADAKGPR
VAIITLADACDIYELRCVLEGLIVQLFTLRAKPKDIRALEKALEENRQALKEGELQQVIDSVQGFYDVLLEGSGNHVAAT
QLRQLQARISYLRATSVSQENRRGASNKEMELMVEAIKSGDPLAAHQASVDHVRNAARVALEYLKSKQDEVSKVRDIVAP
VALKEPRIGR

Sequences:

>Translated_250_residues
MKRLPLDDTFKVNRNPVTLREIVLDKLRSAIMNFQLLPGDRLVERDLCDRLGVSRTSVREALRHLESEGLVEFADAKGPR
VAIITLADACDIYELRCVLEGLIVQLFTLRAKPKDIRALEKALEENRQALKEGELQQVIDSVQGFYDVLLEGSGNHVAAT
QLRQLQARISYLRATSVSQENRRGASNKEMELMVEAIKSGDPLAAHQASVDHVRNAARVALEYLKSKQDEVSKVRDIVAP
VALKEPRIGR
>Mature_250_residues
MKRLPLDDTFKVNRNPVTLREIVLDKLRSAIMNFQLLPGDRLVERDLCDRLGVSRTSVREALRHLESEGLVEFADAKGPR
VAIITLADACDIYELRCVLEGLIVQLFTLRAKPKDIRALEKALEENRQALKEGELQQVIDSVQGFYDVLLEGSGNHVAAT
QLRQLQARISYLRATSVSQENRRGASNKEMELMVEAIKSGDPLAAHQASVDHVRNAARVALEYLKSKQDEVSKVRDIVAP
VALKEPRIGR

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000485
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 28030; Mature: 28030

Theoretical pI: Translated: 8.47; Mature: 8.47

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKRLPLDDTFKVNRNPVTLREIVLDKLRSAIMNFQLLPGDRLVERDLCDRLGVSRTSVRE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHH
ALRHLESEGLVEFADAKGPRVAIITLADACDIYELRCVLEGLIVQLFTLRAKPKDIRALE
HHHHHHHCCCEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KALEENRQALKEGELQQVIDSVQGFYDVLLEGSGNHVAATQLRQLQARISYLRATSVSQE
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
NRRGASNKEMELMVEAIKSGDPLAAHQASVDHVRNAARVALEYLKSKQDEVSKVRDIVAP
HHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VALKEPRIGR
HHCCCCCCCC
>Mature Secondary Structure
MKRLPLDDTFKVNRNPVTLREIVLDKLRSAIMNFQLLPGDRLVERDLCDRLGVSRTSVRE
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCHHHHHH
ALRHLESEGLVEFADAKGPRVAIITLADACDIYELRCVLEGLIVQLFTLRAKPKDIRALE
HHHHHHHCCCEEECCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
KALEENRQALKEGELQQVIDSVQGFYDVLLEGSGNHVAATQLRQLQARISYLRATSVSQE
HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCHH
NRRGASNKEMELMVEAIKSGDPLAAHQASVDHVRNAARVALEYLKSKQDEVSKVRDIVAP
HHCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
VALKEPRIGR
HHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]