Click here to switch to the map view.

The map label for this gene is yfdE [H]

Identifier: 66045415

GI number: 66045415

Start: 2528057

End: 2529280

Strand: Reverse

Name: yfdE [H]

Synonym: Psyr_2175

Alternate gene names: 66045415

Gene position: 2529280-2528057 (Counterclockwise)

Preceding gene: 66045416

Following gene: 66045414

Centisome position: 41.51

GC content: 58.42

Gene sequence:

>1224_bases
ATGACAAGAGAGATAATAATCATGAGCCAACCCAAAGGCATCCGTCCGCTCGATGACGTTACCGTCGTCAGCCTTGAGCA
TGCGATTGCAGCGCCCTTCTGCACCCGACAATTGGCCGATCTTGGCGCGCGTGTGATCAAGGTCGAACGCCCAGGCACCG
GTGATTTCGCCAGAGGGTACGACCAACGCGTCAACGGTCTCGCCTCGCACTTCGTCTGGACCAATCGCTCGAAAGAAAGC
CTGACCCTCGATCTGAAACAAGATTCGGCCACCGAGGTGCTGGACAGCTTGCTGGCCACTGCCGATGTCCTGGTGCAGAA
CCTGGCGCCGGGTGCCGCAGCACGAATGGGACTTTCATTTGAGGCTTTGCATCAGCGGTTTCCGCGCCTGATCGTTTGTG
ACATTTCAGGCTACGGCGCAGGCGGCCCGTATGAAAAGAAAAAAGCCTATGACCTGTTGATCCAGAGCGAAGGCGGTTTC
CTGTCGGTCACCGGCGGACCGGGTGAAGACGAAATGGCCAAGGCCGGTTGCTCGATTGCTGACATCGCGGCCGGCATGTA
CGCCTACACCGGAATTCTGTCTGCCTTGCTGTTGCGTGGACGCACTGGCGAAGGCAGCCACCTCGATGTGTCCATGCTGG
AAAGCCTGGTCGAGTGGATGAACTACCCGATGTACTACGCGTACGACGGCTCTCCCCCTCCCCCTCGCGCCGGCGCCGCG
CACGCCACAATTTACCCCTATGGTCCCTTCCCCATCGGTGACGGCACCACAGTCATGCTGGGGTTGCAGAACGAGCGTGA
GTGGCAGCTGTTTTGCGACAAGGTACTGCTTACTCCTGAACTGGCGAAAGACGAACGTTTCTCTGCCAACTTCAAGCGCG
TCGAAAACCGCCAGGCGCTGCGGGCACTCATCGTTGAATCGTTCTCCACACTCAATTTCGATGCCGTGTTTGATCGGTTG
GAGCATGCGCAAATTGCTAATGCTCGGGTCAATGACATGCAAGGTGTTTGGGACCATCCGCAACTTCAGGCGCGTGATCG
CTGGCGGGAAGTCGAAACCTCCGCCGGTACCGTTCCGAGCTTGATACCTCCCGGCAGCAACAGCGCGTTCGAGCCACGTA
TGGATGCCGTACCGGGTCTAGGTCAGCACACCGAACAGGTGCTCAGGGAACTGGGGCTGGGTACAGACCGTATTGAACAA
ATGCGCGTAGCCGGGGCGATTTAG

Upstream 100 bases:

>100_bases
TGTCGTACGTTGCCGAACACCTGCTCGAACTGCCGCGCTCCTTTTAAGGAATAAGCGTATAGCCCAGTGCGTCGGCCCAA
GCAGACGCGACTGGGGAGCC

Downstream 100 bases:

>100_bases
CCTTCAGCTGAAAATAAAAAGCCTGCCTGCAACGATCAAAGTTTTTCGAGAGAACACTGCCCAATGAAAATGCTGGTAGC
TGTGAAACGAGTGGTCGACT

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 406

Protein sequence:

>407_residues
MTREIIIMSQPKGIRPLDDVTVVSLEHAIAAPFCTRQLADLGARVIKVERPGTGDFARGYDQRVNGLASHFVWTNRSKES
LTLDLKQDSATEVLDSLLATADVLVQNLAPGAAARMGLSFEALHQRFPRLIVCDISGYGAGGPYEKKKAYDLLIQSEGGF
LSVTGGPGEDEMAKAGCSIADIAAGMYAYTGILSALLLRGRTGEGSHLDVSMLESLVEWMNYPMYYAYDGSPPPPRAGAA
HATIYPYGPFPIGDGTTVMLGLQNEREWQLFCDKVLLTPELAKDERFSANFKRVENRQALRALIVESFSTLNFDAVFDRL
EHAQIANARVNDMQGVWDHPQLQARDRWREVETSAGTVPSLIPPGSNSAFEPRMDAVPGLGQHTEQVLRELGLGTDRIEQ
MRVAGAI

Sequences:

>Translated_407_residues
MTREIIIMSQPKGIRPLDDVTVVSLEHAIAAPFCTRQLADLGARVIKVERPGTGDFARGYDQRVNGLASHFVWTNRSKES
LTLDLKQDSATEVLDSLLATADVLVQNLAPGAAARMGLSFEALHQRFPRLIVCDISGYGAGGPYEKKKAYDLLIQSEGGF
LSVTGGPGEDEMAKAGCSIADIAAGMYAYTGILSALLLRGRTGEGSHLDVSMLESLVEWMNYPMYYAYDGSPPPPRAGAA
HATIYPYGPFPIGDGTTVMLGLQNEREWQLFCDKVLLTPELAKDERFSANFKRVENRQALRALIVESFSTLNFDAVFDRL
EHAQIANARVNDMQGVWDHPQLQARDRWREVETSAGTVPSLIPPGSNSAFEPRMDAVPGLGQHTEQVLRELGLGTDRIEQ
MRVAGAI
>Mature_406_residues
TREIIIMSQPKGIRPLDDVTVVSLEHAIAAPFCTRQLADLGARVIKVERPGTGDFARGYDQRVNGLASHFVWTNRSKESL
TLDLKQDSATEVLDSLLATADVLVQNLAPGAAARMGLSFEALHQRFPRLIVCDISGYGAGGPYEKKKAYDLLIQSEGGFL
SVTGGPGEDEMAKAGCSIADIAAGMYAYTGILSALLLRGRTGEGSHLDVSMLESLVEWMNYPMYYAYDGSPPPPRAGAAH
ATIYPYGPFPIGDGTTVMLGLQNEREWQLFCDKVLLTPELAKDERFSANFKRVENRQALRALIVESFSTLNFDAVFDRLE
HAQIANARVNDMQGVWDHPQLQARDRWREVETSAGTVPSLIPPGSNSAFEPRMDAVPGLGQHTEQVLRELGLGTDRIEQM
RVAGAI

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=405, Percent_Identity=31.8518518518519, Blast_Score=213, Evalue=3e-55,
Organism=Homo sapiens, GI300863124, Length=429, Percent_Identity=30.5361305361305, Blast_Score=204, Evalue=1e-52,
Organism=Homo sapiens, GI300863126, Length=405, Percent_Identity=29.1358024691358, Blast_Score=164, Evalue=2e-40,
Organism=Homo sapiens, GI13376042, Length=429, Percent_Identity=27.5058275058275, Blast_Score=159, Evalue=6e-39,
Organism=Homo sapiens, GI266456254, Length=390, Percent_Identity=26.6666666666667, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI42794625, Length=390, Percent_Identity=26.6666666666667, Blast_Score=107, Evalue=2e-23,
Organism=Homo sapiens, GI266458393, Length=199, Percent_Identity=36.1809045226131, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI266458397, Length=199, Percent_Identity=36.1809045226131, Blast_Score=103, Evalue=3e-22,
Organism=Homo sapiens, GI42822893, Length=150, Percent_Identity=34.6666666666667, Blast_Score=80, Evalue=3e-15,
Organism=Homo sapiens, GI266458395, Length=150, Percent_Identity=34.6666666666667, Blast_Score=80, Evalue=4e-15,
Organism=Escherichia coli, GI87082093, Length=384, Percent_Identity=31.25, Blast_Score=200, Evalue=2e-52,
Organism=Escherichia coli, GI1788717, Length=416, Percent_Identity=30.7692307692308, Blast_Score=141, Evalue=8e-35,
Organism=Escherichia coli, GI1786222, Length=407, Percent_Identity=25.7985257985258, Blast_Score=94, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI32564160, Length=217, Percent_Identity=30.4147465437788, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI115535051, Length=214, Percent_Identity=29.9065420560748, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648431, Length=398, Percent_Identity=34.1708542713568, Blast_Score=195, Evalue=4e-50,
Organism=Drosophila melanogaster, GI24585488, Length=200, Percent_Identity=28, Blast_Score=78, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 44496; Mature: 44365

Theoretical pI: Translated: 5.05; Mature: 5.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTREIIIMSQPKGIRPLDDVTVVSLEHAIAAPFCTRQLADLGARVIKVERPGTGDFARGY
CCCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
DQRVNGLASHFVWTNRSKESLTLDLKQDSATEVLDSLLATADVLVQNLAPGAAARMGLSF
HHHHHHHHHHHEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH
EALHQRFPRLIVCDISGYGAGGPYEKKKAYDLLIQSEGGFLSVTGGPGEDEMAKAGCSIA
HHHHHHCCEEEEEECCCCCCCCCCCHHHHEEEEEECCCCEEEEECCCCHHHHHHCCCCHH
DIAAGMYAYTGILSALLLRGRTGEGSHLDVSMLESLVEWMNYPMYYAYDGSPPPPRAGAA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
HATIYPYGPFPIGDGTTVMLGLQNEREWQLFCDKVLLTPELAKDERFSANFKRVENRQAL
CEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHH
RALIVESFSTLNFDAVFDRLEHAQIANARVNDMQGVWDHPQLQARDRWREVETSAGTVPS
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
LIPPGSNSAFEPRMDAVPGLGQHTEQVLRELGLGTDRIEQMRVAGAI
CCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
TREIIIMSQPKGIRPLDDVTVVSLEHAIAAPFCTRQLADLGARVIKVERPGTGDFARGY
CCEEEEEECCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHH
DQRVNGLASHFVWTNRSKESLTLDLKQDSATEVLDSLLATADVLVQNLAPGAAARMGLSF
HHHHHHHHHHHEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCH
EALHQRFPRLIVCDISGYGAGGPYEKKKAYDLLIQSEGGFLSVTGGPGEDEMAKAGCSIA
HHHHHHCCEEEEEECCCCCCCCCCCHHHHEEEEEECCCCEEEEECCCCHHHHHHCCCCHH
DIAAGMYAYTGILSALLLRGRTGEGSHLDVSMLESLVEWMNYPMYYAYDGSPPPPRAGAA
HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
HATIYPYGPFPIGDGTTVMLGLQNEREWQLFCDKVLLTPELAKDERFSANFKRVENRQAL
CEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHH
RALIVESFSTLNFDAVFDRLEHAQIANARVNDMQGVWDHPQLQARDRWREVETSAGTVPS
HHHHHHHHHCCCHHHHHHHHHHHHHHCCCHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCC
LIPPGSNSAFEPRMDAVPGLGQHTEQVLRELGLGTDRIEQMRVAGAI
CCCCCCCCCCCCCHHCCCCCCHHHHHHHHHHCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]