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The map label for this gene is fimD [H]

Identifier: 66045277

GI number: 66045277

Start: 2364893

End: 2367406

Strand: Reverse

Name: fimD [H]

Synonym: Psyr_2037

Alternate gene names: 66045277

Gene position: 2367406-2364893 (Counterclockwise)

Preceding gene: 66045278

Following gene: 66045276

Centisome position: 38.85

GC content: 60.66

Gene sequence:

>2514_bases
ATGACCCTATTACCCGATTCCGGGTTCATACCAGTGCGCCTGCGCTTTATGCAGGTGCTGATTGTGTGCGGCAGCGTTAC
CGTACCGCTGGAACTGACCAAGGCGGCAACCCCTGTCAAGTTCCAGTCCGGCTTCCTGCGTCAGGGCCAGGACTATGACA
GTGAGGCCGCGGCCAGCGTGCTGAACCAGTTGTCAGTTGTCGAAAACCTCGGGCCAGGCGATCACTGGGTAGAAATCCAC
GTCAATATGCGCCATTTCGGCCAACGGCAGATCCGTTTCGATGCCGACCCACAAGGCAACGGCCTGCTGCCCTGCCTGTC
GCGGGAACTGCTGGAGCAGATCGGCGTACGCCTCGACAGTCTGGCCGACCCGGCCTTGTTGCAAGTCGCTTGTGTCGCGC
TGGGGCAATTGATTCCGGACGCCAAGGTCGTACTGGACGGCGGCAGACTGCAACTGTCGATCTCGATACCGCAGATCGCC
ATGCGCCGCGACGCCAACGGGCGAGTGGACCCGGCGCTTTGGGATTACGGCATCAACGCCGCCTTCATCAATTACCAGAC
CTCGGCGCAACAGACGACCCATAGGGAAACAGGCACCAGCAGCAGCGCAGACCTGTACCTAAACACCGGTATCAACCTGG
GGTCATGGCGATTGCGCAGCAATCAAAGCGTGCGTCAGGATGCACAGGGACATCGCGAGTGGACCAGAGCCTACGCTTAT
GCACAGCGCGACCTGCCCGGCACCCACGCTAACCTGACCCTCGGTGAAACCTACACCGGCGGCGATGTCTTCCGGAGCGT
GCCGATCAAGGGCGGGTTGATCAAAACCGATCAGGAGATGCTCCCCGATTCCCTGCAGGGTTACGCACCGGTGATCCGTG
GCGTTGCGCAAAGCAGGGCCAAACTGGAAGTCCTGCAGAACGGATACCCGATCTACTCCACGTATGTCAGTGCCGGCCCC
TATGAAATAGATGACCTGAACACGGCGGGCAGCGGCGAACTGGAGATCGTGCTGACCGAGGCCGATGGTCAGGTGCGGCG
CTTTACCCAACCTTACTCGACCATGAGTAACCTGTTGCGCGAAGGCGTCTGGAAATACAGCGCAGCCCTGGGCCGCTTCA
ACGGTGCCTACGCCACCGACCATCCCTGGCTATGGCAAGGCACGCTGGCCGTTGGCACAGGCTGGAACTCGACACTTTAT
GGCGGACTGATGACCAGCGACTTCTACCATGCCGCAGCGCTGGGCGTGTCACGGGACATGGGCATGCTGGGAGCGATGGC
GTTCGATGTGACCCGGTCACGCGCCGGCATCGATCAGCCCGGTCAGTCCAGCGTGCAGGGCATGAGTTACGCCATCAAGT
ACGGCAAGGCGTTCACTACCCATACCAATCTGCGCTTCGCAGGTTATCGCTACTCCACCGCAGGCTATCGGGATTTCGAC
GAAGCCGTCAGTCAGCGCAGCAACGACGATGCGTTCAGGGGTAGCCGCCGAAGCCGACTGGAGGCTTCGATTCATCAGAG
AATCGGCGCACGCAGCAGCGTCGGTCTTACGCTGTCGCAACAGAATTACTGGGGGAGCGATATCGAGCAACGACAATTTC
AGTTCAACTTCAACACCCATCGTGCCGGGATAACCTATAACTTCTACGCCTCACAGTCGCTGAGCGTAGCCAGTAACCGC
GGCAACGACCGGCAGTTCGGCCTGAGCATCTCGATGCCCCTCGACACCGGCCATTCGAGCAATGCCACACTCGACCTGCA
GAGCAGCGCCAATCGCCACAGTCAACGGGGCAGCCTGAGCGGCAGCCTCTACGAAAACCGGGTCAATTATCACGCCAGCC
TGAGCAACGATGACGGCAAGCAGCAAAGTGCCAGCCTTGCGGCGGGCTATCAGGCGCCCTTCGCCAGCCTCGGCGCCGGT
GTAACTCAGGGCAATGATTATCGAAGTACATCAGTCAATGCCAGTGGCGCCTTGTTGCTGCATGCCGACGGCATCGAGTT
CGGCCCGAATCTGGGTGACACCATCGCCCTGGTCGAAGTGCCCGATACACCAGGCGTGGGCATACAGAACGCGACCGGTG
TCAGGACCAATAGTCGTGGCTACGCATTGATGCCCTATCTGCGCCCCTACCGCTATAACCCGATCGCCTTGCAGACCGAC
CGGCTTGGCCCCGAGGTGGAAATCGATAACGCCAGTGCTCAAGTGGTGCCTGCCAGGGGTGCCGTGATCAAGACCACCTT
CGCTGCACGCACGGTGACACGCCTGGTCATCAATGCAACCACTCCCAGTGGCAAGCCGCTGCCATTCGGCGCCCGGGTCA
GCGACGCGCAGGGCAACATCCTGGGCATCGCAGGCCAGGGCGGGCAGATTTTGCTGTCCACCGACATGCAGGCACAAACC
CTCGATGTCCACTGGGGAGAGAAAAGCGACCCTCAGTGTCGTCTGCACATAGACCCCGCTGGCATGCCTTTGGCCCAGGG
CTACCGAATGCAGGACATGACGTGTACCCAGTGA

Upstream 100 bases:

>100_bases
GCGATCAACGATTACGGCGGCTACAGCACGCCGCTGACAGCTACAGCCACGCTGACTGACTGAAACAGCGCTGGCCCGTT
TCATCCCCAGGACATTGAAC

Downstream 100 bases:

>100_bases
CATCAGGTCTGAGCCATCCGCGACATTGTTATTTCAGGAATCACCCATGAACACTGCATTGAATGCCCTGCTCCCCAGTC
TGATCCTGTTGGGAGCCAGC

Product: fimbrial biogenesis outer membrane usher protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 837; Mature: 836

Protein sequence:

>837_residues
MTLLPDSGFIPVRLRFMQVLIVCGSVTVPLELTKAATPVKFQSGFLRQGQDYDSEAAASVLNQLSVVENLGPGDHWVEIH
VNMRHFGQRQIRFDADPQGNGLLPCLSRELLEQIGVRLDSLADPALLQVACVALGQLIPDAKVVLDGGRLQLSISIPQIA
MRRDANGRVDPALWDYGINAAFINYQTSAQQTTHRETGTSSSADLYLNTGINLGSWRLRSNQSVRQDAQGHREWTRAYAY
AQRDLPGTHANLTLGETYTGGDVFRSVPIKGGLIKTDQEMLPDSLQGYAPVIRGVAQSRAKLEVLQNGYPIYSTYVSAGP
YEIDDLNTAGSGELEIVLTEADGQVRRFTQPYSTMSNLLREGVWKYSAALGRFNGAYATDHPWLWQGTLAVGTGWNSTLY
GGLMTSDFYHAAALGVSRDMGMLGAMAFDVTRSRAGIDQPGQSSVQGMSYAIKYGKAFTTHTNLRFAGYRYSTAGYRDFD
EAVSQRSNDDAFRGSRRSRLEASIHQRIGARSSVGLTLSQQNYWGSDIEQRQFQFNFNTHRAGITYNFYASQSLSVASNR
GNDRQFGLSISMPLDTGHSSNATLDLQSSANRHSQRGSLSGSLYENRVNYHASLSNDDGKQQSASLAAGYQAPFASLGAG
VTQGNDYRSTSVNASGALLLHADGIEFGPNLGDTIALVEVPDTPGVGIQNATGVRTNSRGYALMPYLRPYRYNPIALQTD
RLGPEVEIDNASAQVVPARGAVIKTTFAARTVTRLVINATTPSGKPLPFGARVSDAQGNILGIAGQGGQILLSTDMQAQT
LDVHWGEKSDPQCRLHIDPAGMPLAQGYRMQDMTCTQ

Sequences:

>Translated_837_residues
MTLLPDSGFIPVRLRFMQVLIVCGSVTVPLELTKAATPVKFQSGFLRQGQDYDSEAAASVLNQLSVVENLGPGDHWVEIH
VNMRHFGQRQIRFDADPQGNGLLPCLSRELLEQIGVRLDSLADPALLQVACVALGQLIPDAKVVLDGGRLQLSISIPQIA
MRRDANGRVDPALWDYGINAAFINYQTSAQQTTHRETGTSSSADLYLNTGINLGSWRLRSNQSVRQDAQGHREWTRAYAY
AQRDLPGTHANLTLGETYTGGDVFRSVPIKGGLIKTDQEMLPDSLQGYAPVIRGVAQSRAKLEVLQNGYPIYSTYVSAGP
YEIDDLNTAGSGELEIVLTEADGQVRRFTQPYSTMSNLLREGVWKYSAALGRFNGAYATDHPWLWQGTLAVGTGWNSTLY
GGLMTSDFYHAAALGVSRDMGMLGAMAFDVTRSRAGIDQPGQSSVQGMSYAIKYGKAFTTHTNLRFAGYRYSTAGYRDFD
EAVSQRSNDDAFRGSRRSRLEASIHQRIGARSSVGLTLSQQNYWGSDIEQRQFQFNFNTHRAGITYNFYASQSLSVASNR
GNDRQFGLSISMPLDTGHSSNATLDLQSSANRHSQRGSLSGSLYENRVNYHASLSNDDGKQQSASLAAGYQAPFASLGAG
VTQGNDYRSTSVNASGALLLHADGIEFGPNLGDTIALVEVPDTPGVGIQNATGVRTNSRGYALMPYLRPYRYNPIALQTD
RLGPEVEIDNASAQVVPARGAVIKTTFAARTVTRLVINATTPSGKPLPFGARVSDAQGNILGIAGQGGQILLSTDMQAQT
LDVHWGEKSDPQCRLHIDPAGMPLAQGYRMQDMTCTQ
>Mature_836_residues
TLLPDSGFIPVRLRFMQVLIVCGSVTVPLELTKAATPVKFQSGFLRQGQDYDSEAAASVLNQLSVVENLGPGDHWVEIHV
NMRHFGQRQIRFDADPQGNGLLPCLSRELLEQIGVRLDSLADPALLQVACVALGQLIPDAKVVLDGGRLQLSISIPQIAM
RRDANGRVDPALWDYGINAAFINYQTSAQQTTHRETGTSSSADLYLNTGINLGSWRLRSNQSVRQDAQGHREWTRAYAYA
QRDLPGTHANLTLGETYTGGDVFRSVPIKGGLIKTDQEMLPDSLQGYAPVIRGVAQSRAKLEVLQNGYPIYSTYVSAGPY
EIDDLNTAGSGELEIVLTEADGQVRRFTQPYSTMSNLLREGVWKYSAALGRFNGAYATDHPWLWQGTLAVGTGWNSTLYG
GLMTSDFYHAAALGVSRDMGMLGAMAFDVTRSRAGIDQPGQSSVQGMSYAIKYGKAFTTHTNLRFAGYRYSTAGYRDFDE
AVSQRSNDDAFRGSRRSRLEASIHQRIGARSSVGLTLSQQNYWGSDIEQRQFQFNFNTHRAGITYNFYASQSLSVASNRG
NDRQFGLSISMPLDTGHSSNATLDLQSSANRHSQRGSLSGSLYENRVNYHASLSNDDGKQQSASLAAGYQAPFASLGAGV
TQGNDYRSTSVNASGALLLHADGIEFGPNLGDTIALVEVPDTPGVGIQNATGVRTNSRGYALMPYLRPYRYNPIALQTDR
LGPEVEIDNASAQVVPARGAVIKTTFAARTVTRLVINATTPSGKPLPFGARVSDAQGNILGIAGQGGQILLSTDMQAQTL
DVHWGEKSDPQCRLHIDPAGMPLAQGYRMQDMTCTQ

Specific function: Involved in the export and assembly of fimA fimbrial subunits across the outer membrane [H]

COG id: COG3188

COG function: function code NU; P pilus assembly protein, porin PapC

Gene ontology:

Cell location: Cell outer membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fimbrial export usher family [H]

Homologues:

Organism=Escherichia coli, GI1790772, Length=846, Percent_Identity=32.9787234042553, Blast_Score=436, Evalue=1e-123,
Organism=Escherichia coli, GI1787172, Length=834, Percent_Identity=32.0143884892086, Blast_Score=411, Evalue=1e-116,
Organism=Escherichia coli, GI1789533, Length=756, Percent_Identity=33.7301587301587, Blast_Score=408, Evalue=1e-115,
Organism=Escherichia coli, GI1786744, Length=880, Percent_Identity=31.5909090909091, Blast_Score=392, Evalue=1e-110,
Organism=Escherichia coli, GI1786332, Length=812, Percent_Identity=29.8029556650246, Blast_Score=316, Evalue=3e-87,
Organism=Escherichia coli, GI1788427, Length=775, Percent_Identity=28.3870967741935, Blast_Score=316, Evalue=4e-87,
Organism=Escherichia coli, GI87081778, Length=775, Percent_Identity=27.3548387096774, Blast_Score=236, Evalue=5e-63,
Organism=Escherichia coli, GI1789610, Length=782, Percent_Identity=25.1918158567775, Blast_Score=178, Evalue=1e-45,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000015
- InterPro:   IPR018030 [H]

Pfam domain/function: PF00577 Usher [H]

EC number: NA

Molecular weight: Translated: 90918; Mature: 90787

Theoretical pI: Translated: 7.13; Mature: 7.13

Prosite motif: PS01151 FIMBRIAL_USHER

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLLPDSGFIPVRLRFMQVLIVCGSVTVPLELTKAATPVKFQSGFLRQGQDYDSEAAASV
CCCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCEECCCCHHCCCCCCCHHHHHHH
LNQLSVVENLGPGDHWVEIHVNMRHFGQRQIRFDADPQGNGLLPCLSRELLEQIGVRLDS
HHHHHHHHCCCCCCEEEEEEEEHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHH
LADPALLQVACVALGQLIPDAKVVLDGGRLQLSISIPQIAMRRDANGRVDPALWDYGINA
CCCHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCEEEECCCCCCCCCHHHHCCCCE
AFINYQTSAQQTTHRETGTSSSADLYLNTGINLGSWRLRSNQSVRQDAQGHREWTRAYAY
EEEEEECCCHHHHHHCCCCCCCCEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHH
AQRDLPGTHANLTLGETYTGGDVFRSVPIKGGLIKTDQEMLPDSLQGYAPVIRGVAQSRA
HHCCCCCCCCEEEECCEECCCHHHEECCCCCCEEECCHHHCCHHHHHHHHHHHHHHHHHH
KLEVLQNGYPIYSTYVSAGPYEIDDLNTAGSGELEIVLTEADGQVRRFTQPYSTMSNLLR
HHHHHHCCCCEEEEEECCCCEEECCCCCCCCCEEEEEEECCCCCHHHHCCHHHHHHHHHH
EGVWKYSAALGRFNGAYATDHPWLWQGTLAVGTGWNSTLYGGLMTSDFYHAAALGVSRDM
HHHHHHHHHHHCCCCCCCCCCCEEEECEEEEECCCCCCEECCCHHCCHHHHHHHCCCCCC
GMLGAMAFDVTRSRAGIDQPGQSSVQGMSYAIKYGKAFTTHTNLRFAGYRYSTAGYRDFD
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEECCCEEEEECCEEEEEEEECCCCCCCHH
EAVSQRSNDDAFRGSRRSRLEASIHQRIGARSSVGLTLSQQNYWGSDIEQRQFQFNFNTH
HHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCE
RAGITYNFYASQSLSVASNRGNDRQFGLSISMPLDTGHSSNATLDLQSSANRHSQRGSLS
ECCEEEEEECCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCHHHCCCCC
GSLYENRVNYHASLSNDDGKQQSASLAAGYQAPFASLGAGVTQGNDYRSTSVNASGALLL
CCHHHCCEEEEEECCCCCCCHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEE
HADGIEFGPNLGDTIALVEVPDTPGVGIQNATGVRTNSRGYALMPYLRPYRYNPIALQTD
EECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCCEEEECCCCCCCCCCEEEEEC
RLGPEVEIDNASAQVVPARGAVIKTTFAARTVTRLVINATTPSGKPLPFGARVSDAQGNI
CCCCEEEECCCCEEEEECCCCEEEEHHHHHEEEEEEEEECCCCCCCCCCCCEECCCCCCE
LGIAGQGGQILLSTDMQAQTLDVHWGEKSDPQCRLHIDPAGMPLAQGYRMQDMTCTQ
EEEECCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCHHCCCEECCCCCCC
>Mature Secondary Structure 
TLLPDSGFIPVRLRFMQVLIVCGSVTVPLELTKAATPVKFQSGFLRQGQDYDSEAAASV
CCCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCEECCCCHHCCCCCCCHHHHHHH
LNQLSVVENLGPGDHWVEIHVNMRHFGQRQIRFDADPQGNGLLPCLSRELLEQIGVRLDS
HHHHHHHHCCCCCCEEEEEEEEHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHCCHHHH
LADPALLQVACVALGQLIPDAKVVLDGGRLQLSISIPQIAMRRDANGRVDPALWDYGINA
CCCHHHHHHHHHHHHHHCCCCEEEEECCEEEEEEECCCEEEECCCCCCCCCHHHHCCCCE
AFINYQTSAQQTTHRETGTSSSADLYLNTGINLGSWRLRSNQSVRQDAQGHREWTRAYAY
EEEEEECCCHHHHHHCCCCCCCCEEEEECCCCCCCEEECCCCCHHHHHHHHHHHHHHHHH
AQRDLPGTHANLTLGETYTGGDVFRSVPIKGGLIKTDQEMLPDSLQGYAPVIRGVAQSRA
HHCCCCCCCCEEEECCEECCCHHHEECCCCCCEEECCHHHCCHHHHHHHHHHHHHHHHHH
KLEVLQNGYPIYSTYVSAGPYEIDDLNTAGSGELEIVLTEADGQVRRFTQPYSTMSNLLR
HHHHHHCCCCEEEEEECCCCEEECCCCCCCCCEEEEEEECCCCCHHHHCCHHHHHHHHHH
EGVWKYSAALGRFNGAYATDHPWLWQGTLAVGTGWNSTLYGGLMTSDFYHAAALGVSRDM
HHHHHHHHHHHCCCCCCCCCCCEEEECEEEEECCCCCCEECCCHHCCHHHHHHHCCCCCC
GMLGAMAFDVTRSRAGIDQPGQSSVQGMSYAIKYGKAFTTHTNLRFAGYRYSTAGYRDFD
HHHHHHHHHHHHHHCCCCCCCCHHHHHHHEEEECCCEEEEECCEEEEEEEECCCCCCCHH
EAVSQRSNDDAFRGSRRSRLEASIHQRIGARSSVGLTLSQQNYWGSDIEQRQFQFNFNTH
HHHHCCCCCHHHCCCHHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCEEEEEECCCE
RAGITYNFYASQSLSVASNRGNDRQFGLSISMPLDTGHSSNATLDLQSSANRHSQRGSLS
ECCEEEEEECCCCEEECCCCCCCEEEEEEEEECCCCCCCCCCEEEECCCCCCHHHCCCCC
GSLYENRVNYHASLSNDDGKQQSASLAAGYQAPFASLGAGVTQGNDYRSTSVNASGALLL
CCHHHCCEEEEEECCCCCCCHHHHHHHCCCCCCHHHHCCCCCCCCCCCCCCCCCCCEEEE
HADGIEFGPNLGDTIALVEVPDTPGVGIQNATGVRTNSRGYALMPYLRPYRYNPIALQTD
EECCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCEECCCCEEEECCCCCCCCCCEEEEEC
RLGPEVEIDNASAQVVPARGAVIKTTFAARTVTRLVINATTPSGKPLPFGARVSDAQGNI
CCCCEEEECCCCEEEEECCCCEEEEHHHHHEEEEEEEEECCCCCCCCCCCCEECCCCCCE
LGIAGQGGQILLSTDMQAQTLDVHWGEKSDPQCRLHIDPAGMPLAQGYRMQDMTCTQ
EEEECCCCEEEEECCCCEEEEEEECCCCCCCEEEEEECCCCCCHHCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1970114; 7610040; 9278503 [H]