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The map label for this gene is sdhD [H]

Identifier: 66045246

GI number: 66045246

Start: 2326540

End: 2326908

Strand: Direct

Name: sdhD [H]

Synonym: Psyr_2006

Alternate gene names: 66045246

Gene position: 2326540-2326908 (Clockwise)

Preceding gene: 66045245

Following gene: 66045247

Centisome position: 38.18

GC content: 58.27

Gene sequence:

>369_bases
ATGGTAACCAACGTCACCAACCTGTCGCGTTCGGGTCTCTATGACTGGATGGCTCAGCGTGTTTCCGCAGTCGTGCTCGC
GGCTTATTTCATCTTCCTGATCGGCTACATGGTCTTTCACCCGGGTCTGAGCTACGCCCAATGGCATGGTCTGTTCGCTC
ACAACGGAATGCGTATCTTCAGTCTCCTGGCCCTCGTTGCCCTTGGCGCTCACGCCTGGGTCGGCATGTGGACCATCGCG
ACCGACTACCTGACGCCGATGGCGCTGGGCAAGTCCGCCACTGCAGTACGTTTCCTGTTCCAGGCGGTATGCGGCGTTCT
GATGTTCGCCTACTTCGTCTGGGGCGTGCAGATTCTTTGGGGTATCTGA

Upstream 100 bases:

>100_bases
TGGACTCGGGGGTAGGCGAGACGCTTGAAGGCGGCAAGCTGGGCTCCAAAATCGTTATCGCGGTCTCCGTGATTCTGATT
CTTCTGGCGGGAGTATGGAT

Downstream 100 bases:

>100_bases
TCCATGGCTAACATTAATGCGCTTTCTTTCGACGCCATCATCATTGGTGGTGGCGGTGCCGGCATGCGCGCTGCGCTGCA
GCTCGCCCAGGGCGGTCACA

Product: succinate dehydrogenase, hydrophobic membrane anchor protein

Products: fumarate; reduced acceptor

Alternate protein names: NA

Number of amino acids: Translated: 122; Mature: 122

Protein sequence:

>122_residues
MVTNVTNLSRSGLYDWMAQRVSAVVLAAYFIFLIGYMVFHPGLSYAQWHGLFAHNGMRIFSLLALVALGAHAWVGMWTIA
TDYLTPMALGKSATAVRFLFQAVCGVLMFAYFVWGVQILWGI

Sequences:

>Translated_122_residues
MVTNVTNLSRSGLYDWMAQRVSAVVLAAYFIFLIGYMVFHPGLSYAQWHGLFAHNGMRIFSLLALVALGAHAWVGMWTIA
TDYLTPMALGKSATAVRFLFQAVCGVLMFAYFVWGVQILWGI
>Mature_122_residues
MVTNVTNLSRSGLYDWMAQRVSAVVLAAYFIFLIGYMVFHPGLSYAQWHGLFAHNGMRIFSLLALVALGAHAWVGMWTIA
TDYLTPMALGKSATAVRFLFQAVCGVLMFAYFVWGVQILWGI

Specific function: Membrane-anchoring subunit of succinate dehydrogenase (SDH) [H]

COG id: COG2142

COG function: function code C; Succinate dehydrogenase, hydrophobic anchor subunit

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786941, Length=122, Percent_Identity=36.8852459016393, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014312
- InterPro:   IPR000701 [H]

Pfam domain/function: PF01127 Sdh_cyt [H]

EC number: 1.3.99.1

Molecular weight: Translated: 13600; Mature: 13600

Theoretical pI: Translated: 9.48; Mature: 9.48

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.7 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.7 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVTNVTNLSRSGLYDWMAQRVSAVVLAAYFIFLIGYMVFHPGLSYAQWHGLFAHNGMRIF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
SLLALVALGAHAWVGMWTIATDYLTPMALGKSATAVRFLFQAVCGVLMFAYFVWGVQILW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GI
CC
>Mature Secondary Structure
MVTNVTNLSRSGLYDWMAQRVSAVVLAAYFIFLIGYMVFHPGLSYAQWHGLFAHNGMRIF
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCHHHHH
SLLALVALGAHAWVGMWTIATDYLTPMALGKSATAVRFLFQAVCGVLMFAYFVWGVQILW
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GI
CC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: succinate; acceptor

Specific reaction: succinate + acceptor = fumarate + reduced acceptor

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7698664; 12704232 [H]