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The map label for this gene is hcp1 [H]

Identifier: 66045175

GI number: 66045175

Start: 2208062

End: 2208556

Strand: Reverse

Name: hcp1 [H]

Synonym: Psyr_1935

Alternate gene names: 66045175

Gene position: 2208556-2208062 (Counterclockwise)

Preceding gene: 66045178

Following gene: 66045173

Centisome position: 36.24

GC content: 48.69

Gene sequence:

>495_bases
ATGTCTTTTGACGCATTTATGCAGGTGGACGGTGTAGAGGGAGAGTCTCTGGACGACGCCCACAAAGGCTGGGTAGAACT
ACTTTCCTACCATTACGACGCAGTTCAGTCGGTCAGTACAACTGCCTGTTCCAGCGGCGGCGCGACTGCTGGGGGCGTGA
CTCTGGGCGACCTTAGGGTAAGTAAATACATAGACAAAGCAACACCCAAACTATTTGAACTTTGCTGCCGAGGTTCGCAT
ATCAAAAAAGTAACTATACGCGTACACCGCGCAGGCACTGAGAAATTTAAATATTTAGATATCGTTCTTGAAGAAGTGTT
GATATCAACGATTAGCGGCAATGGCGCGGAACATGCTGGCCTTCCCAAAGAAACGATCACACTAAACTACGGGCGTATAA
AACTCGAATACTCGCAACAGAGGCGTACTGATGGTGGTAGTGCAGGGATAGTGTTCGGAGGCTGGGATAGAGTCGCCAAG
AAACCTTTCGCTTAA

Upstream 100 bases:

>100_bases
CCGGGAGCAGTGGCAGACTCAGCATTGACTAGTCAGAAGCTGGCAATCTACGGGCTCCGTAAGCTAGTCTAAGCCCTCAA
TTTTTAAGCAGGAAGCTGAT

Downstream 100 bases:

>100_bases
AAAGAACTATATCTAGCACAGCAACTCAGAGCAGGCCCGCACTTTTGCGGACCTAACCTTGCCTACCAGTAAAATAACAA
CACTAAACACATCAAAACAA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 164; Mature: 163

Protein sequence:

>164_residues
MSFDAFMQVDGVEGESLDDAHKGWVELLSYHYDAVQSVSTTACSSGGATAGGVTLGDLRVSKYIDKATPKLFELCCRGSH
IKKVTIRVHRAGTEKFKYLDIVLEEVLISTISGNGAEHAGLPKETITLNYGRIKLEYSQQRRTDGGSAGIVFGGWDRVAK
KPFA

Sequences:

>Translated_164_residues
MSFDAFMQVDGVEGESLDDAHKGWVELLSYHYDAVQSVSTTACSSGGATAGGVTLGDLRVSKYIDKATPKLFELCCRGSH
IKKVTIRVHRAGTEKFKYLDIVLEEVLISTISGNGAEHAGLPKETITLNYGRIKLEYSQQRRTDGGSAGIVFGGWDRVAK
KPFA
>Mature_163_residues
SFDAFMQVDGVEGESLDDAHKGWVELLSYHYDAVQSVSTTACSSGGATAGGVTLGDLRVSKYIDKATPKLFELCCRGSHI
KKVTIRVHRAGTEKFKYLDIVLEEVLISTISGNGAEHAGLPKETITLNYGRIKLEYSQQRRTDGGSAGIVFGGWDRVAKK
PFA

Specific function: Required for assembly of the protein secretion apparatus HSI-I. Actively secreted during chronic infection of cystic fibrosis patients [H]

COG id: COG3157

COG function: function code S; Hemolysin-coregulated protein (uncharacterized)

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hcp1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017728
- InterPro:   IPR008514 [H]

Pfam domain/function: PF05638 DUF796 [H]

EC number: NA

Molecular weight: Translated: 17802; Mature: 17671

Theoretical pI: Translated: 7.55; Mature: 7.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFDAFMQVDGVEGESLDDAHKGWVELLSYHYDAVQSVSTTACSSGGATAGGVTLGDLRV
CCCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHH
SKYIDKATPKLFELCCRGSHIKKVTIRVHRAGTEKFKYLDIVLEEVLISTISGNGAEHAG
HHHHHHCCHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
LPKETITLNYGRIKLEYSQQRRTDGGSAGIVFGGWDRVAKKPFA
CCCCEEEEECCEEEEEECHHCCCCCCCEEEEECCHHHHHCCCCC
>Mature Secondary Structure 
SFDAFMQVDGVEGESLDDAHKGWVELLSYHYDAVQSVSTTACSSGGATAGGVTLGDLRV
CCCCCEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEHHHHH
SKYIDKATPKLFELCCRGSHIKKVTIRVHRAGTEKFKYLDIVLEEVLISTISGNGAEHAG
HHHHHHCCHHHHHHHHCCCCEEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCC
LPKETITLNYGRIKLEYSQQRRTDGGSAGIVFGGWDRVAKKPFA
CCCCEEEEECCEEEEEECHHCCCCCCCEEEEECCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]