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The map label for this gene is ydcO [H]

Identifier: 66045083

GI number: 66045083

Start: 2119415

End: 2120608

Strand: Reverse

Name: ydcO [H]

Synonym: Psyr_1839

Alternate gene names: 66045083

Gene position: 2120608-2119415 (Counterclockwise)

Preceding gene: 66045084

Following gene: 66045081

Centisome position: 34.8

GC content: 61.89

Gene sequence:

>1194_bases
ATGAACCAATCCCTCAAGGTGCCATTGCGCCCGCTGACAGACTCATCGCCGTCGGCGGTGGTTGCCGGTTTCATCGCCAT
GATGACCGGCTGCACCAGTTCGCTGGTGCTGATGTTCCAGGCGGGCCAGGCGGCAGGGCTGAGCAGCGTGCAGATTTCAT
CCTGGCTGTGGGCGCTGTTCATGGGCATGGCGGTGTGCAGCATCGGCCTCTCGCTGCGCTACCGCATGCCGATTACCGTG
GCGTGGTCGACACCCGGCGCCGCCCTGCTGATCACCAGCCTGGGCGGTGTCAGCTACCCACAGGCCATTGGCGCATTCAT
GACCAGTGCGCTGCTGGTGATTCTGTGCGGAGTGACCGGGAGTTTCGAGCGCATCGTGCGGCGCATGCCAGCCTCGCTGG
CCGCGGCCCTGCTGGCAGGGATTCTGTTCCGGATCGGCAGCGAGATCTTTATTGCCGCACAGCACCACACCAGCCTGGTG
CTGGGCATGTTTTTCACTTATCTGCTGGTCAAACGTCTGTCGCCGCGCTACTCGGTGCTGCTCGCGCTGCTGGTCGGTAT
CGGCATTTCAGGCATGCTGGGGCTGCTGAACTTTGACGGCCTGGCGCTGGAAGTCGCCATGCCGGTCTGGACCACGCCCG
AGTTTTCATGGGCGGCGACGGTCAGCATCGGCATCCCGCTGTTCGTGGTGGCCATGACCTCGCAGAACATGCCCGGTGTG
GCCGTGTTGCGAGCCGACGGCTACTACCCGCCTACCTCGCCGCTGATATCGGTGACCGGCTTCGCCTCATTGCTCACAGC
GCCATTTGGCTGCCACGGGATCAATCTGGCGGCGATCAGTGCCGCCATCTGTACCAGCCCTCATGCCCATGAGGACAAAT
CAAAACGCTATACAGCGGCGATCTGGTGCGGGATTTTCTATGCAATAGCCGGCATTTTCGGTGCAACCCTGGCGGGTCTG
TTCAGTGCGTTCCCCAAGGAACTGATGCTCTCGATTGCCGCACTGGCGCTGCTCGGATCGATCATCAATGGCCTGACTGT
TGCGATGGCCGAACCGAGGGAGCGCGAACCCGCCTTGATCACCTTCATGGTGACCGCTTCGGGACTGACGCTGTTCTCCA
TAGGCTCGGCATTCTGGGGCATCGTAGCGGGCTTGCTAGCCTTGCTGATCCTGAACACACGCAAGACCGATTAG

Upstream 100 bases:

>100_bases
TGTGCTGGCGTTTACTCGTGTCGCTGTATTGCAAGGCCGGGCAGCCATGCGTTTAGGCTTGGCGCCCTTTGCTACCTGCC
CGCTTCAAGGAACGCCCAGC

Downstream 100 bases:

>100_bases
GCCAGCCGCCAGCAGCACGACAGAGACATCAGCTACGCGCGGCGGGGGCTACCAGCAGAGTTCCGGCGTCGGCATCGAGT
ATCGCCTGAGTGCCCAGTGG

Product: benzoate membrane transport protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MNQSLKVPLRPLTDSSPSAVVAGFIAMMTGCTSSLVLMFQAGQAAGLSSVQISSWLWALFMGMAVCSIGLSLRYRMPITV
AWSTPGAALLITSLGGVSYPQAIGAFMTSALLVILCGVTGSFERIVRRMPASLAAALLAGILFRIGSEIFIAAQHHTSLV
LGMFFTYLLVKRLSPRYSVLLALLVGIGISGMLGLLNFDGLALEVAMPVWTTPEFSWAATVSIGIPLFVVAMTSQNMPGV
AVLRADGYYPPTSPLISVTGFASLLTAPFGCHGINLAAISAAICTSPHAHEDKSKRYTAAIWCGIFYAIAGIFGATLAGL
FSAFPKELMLSIAALALLGSIINGLTVAMAEPREREPALITFMVTASGLTLFSIGSAFWGIVAGLLALLILNTRKTD

Sequences:

>Translated_397_residues
MNQSLKVPLRPLTDSSPSAVVAGFIAMMTGCTSSLVLMFQAGQAAGLSSVQISSWLWALFMGMAVCSIGLSLRYRMPITV
AWSTPGAALLITSLGGVSYPQAIGAFMTSALLVILCGVTGSFERIVRRMPASLAAALLAGILFRIGSEIFIAAQHHTSLV
LGMFFTYLLVKRLSPRYSVLLALLVGIGISGMLGLLNFDGLALEVAMPVWTTPEFSWAATVSIGIPLFVVAMTSQNMPGV
AVLRADGYYPPTSPLISVTGFASLLTAPFGCHGINLAAISAAICTSPHAHEDKSKRYTAAIWCGIFYAIAGIFGATLAGL
FSAFPKELMLSIAALALLGSIINGLTVAMAEPREREPALITFMVTASGLTLFSIGSAFWGIVAGLLALLILNTRKTD
>Mature_397_residues
MNQSLKVPLRPLTDSSPSAVVAGFIAMMTGCTSSLVLMFQAGQAAGLSSVQISSWLWALFMGMAVCSIGLSLRYRMPITV
AWSTPGAALLITSLGGVSYPQAIGAFMTSALLVILCGVTGSFERIVRRMPASLAAALLAGILFRIGSEIFIAAQHHTSLV
LGMFFTYLLVKRLSPRYSVLLALLVGIGISGMLGLLNFDGLALEVAMPVWTTPEFSWAATVSIGIPLFVVAMTSQNMPGV
AVLRADGYYPPTSPLISVTGFASLLTAPFGCHGINLAAISAAICTSPHAHEDKSKRYTAAIWCGIFYAIAGIFGATLAGL
FSAFPKELMLSIAALALLGSIINGLTVAMAEPREREPALITFMVTASGLTLFSIGSAFWGIVAGLLALLILNTRKTD

Specific function: Unknown

COG id: COG3135

COG function: function code Q; Uncharacterized protein involved in benzoate metabolism

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081909, Length=376, Percent_Identity=44.9468085106383, Blast_Score=323, Evalue=1e-89,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004711 [H]

Pfam domain/function: PF03594 BenE [H]

EC number: NA

Molecular weight: Translated: 41651; Mature: 41651

Theoretical pI: Translated: 9.01; Mature: 9.01

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNQSLKVPLRPLTDSSPSAVVAGFIAMMTGCTSSLVLMFQAGQAAGLSSVQISSWLWALF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHEEEEECCCCCCCCHHHHHHHHHHHH
MGMAVCSIGLSLRYRMPITVAWSTPGAALLITSLGGVSYPQAIGAFMTSALLVILCGVTG
HHHHHHHHCCEEEEECCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
SFERIVRRMPASLAAALLAGILFRIGSEIFIAAQHHTSLVLGMFFTYLLVKRLSPRYSVL
CHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHH
LALLVGIGISGMLGLLNFDGLALEVAMPVWTTPEFSWAATVSIGIPLFVVAMTSQNMPGV
HHHHHHHCHHHHHHHHCCCCEEEEEEECEECCCCCCEEEEEEECCCEEEEEEECCCCCCE
AVLRADGYYPPTSPLISVTGFASLLTAPFGCHGINLAAISAAICTSPHAHEDKSKRYTAA
EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHH
IWCGIFYAIAGIFGATLAGLFSAFPKELMLSIAALALLGSIINGLTVAMAEPREREPALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEE
TFMVTASGLTLFSIGSAFWGIVAGLLALLILNTRKTD
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure
MNQSLKVPLRPLTDSSPSAVVAGFIAMMTGCTSSLVLMFQAGQAAGLSSVQISSWLWALF
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHEEEEECCCCCCCCHHHHHHHHHHHH
MGMAVCSIGLSLRYRMPITVAWSTPGAALLITSLGGVSYPQAIGAFMTSALLVILCGVTG
HHHHHHHHCCEEEEECCEEEEECCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCC
SFERIVRRMPASLAAALLAGILFRIGSEIFIAAQHHTSLVLGMFFTYLLVKRLSPRYSVL
CHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHHHHHHHHHCCHHHHHH
LALLVGIGISGMLGLLNFDGLALEVAMPVWTTPEFSWAATVSIGIPLFVVAMTSQNMPGV
HHHHHHHCHHHHHHHHCCCCEEEEEEECEECCCCCCEEEEEEECCCEEEEEEECCCCCCE
AVLRADGYYPPTSPLISVTGFASLLTAPFGCHGINLAAISAAICTSPHAHEDKSKRYTAA
EEEEECCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHH
IWCGIFYAIAGIFGATLAGLFSAFPKELMLSIAALALLGSIINGLTVAMAEPREREPALI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCEEE
TFMVTASGLTLFSIGSAFWGIVAGLLALLILNTRKTD
EEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]