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The map label for this gene is yfdE [H]

Identifier: 66044835

GI number: 66044835

Start: 1789271

End: 1790461

Strand: Direct

Name: yfdE [H]

Synonym: Psyr_1590

Alternate gene names: 66044835

Gene position: 1789271-1790461 (Clockwise)

Preceding gene: 66044834

Following gene: 66044836

Centisome position: 29.36

GC content: 62.38

Gene sequence:

>1191_bases
ATGAGCCTGCCTCTTCAGGGCATCAAGGTGGTGGAACTGGGTCAGCTCATTGCCGGGCCGTTCGCGACGAAGATTCTCGC
CGAGTTCGGTGCCGAGGTCATCAAGGTCGAGCCGCCATTGACCGGTGATCCCCTGCGCAAATGGCGTTTGCTGCATAACG
GCACGTCCGTCTGGTGGGCGGTGCAGTCCCGCAACAAACAGTCGGTAACCCTCGATCTGCGCCAGCCTCAGGCGCAGGAG
ATGGCACGGCGGCTGATCCGCGATGCTGATGTACTGGTCGAGAACTTCCGCCCCGGCACACTTGAAGGCTGGGGGTTGAG
CTGGGAAGCGCTGCACGCCCTCAATCCGAAACTGATCATGCTGCGTGTCTCCGGCTACGGGCAGACCGGGCCGTATCGCG
ACCGTCCGGGTTTTGGCGTGATCGGTGAGGCCATGGGCGGTTTGCGTCATCTGTCGGGGGAGGCAGGGCGCACGCCAGTG
CGTGTCGGCGTATCGATTGGCGATTCGCTGTCTGCGCTGCACGGTGTGATCGGCATTCTGCTGGCGCTTCGTCATCGCGA
GCAGAATGGCGGCGACGGGCAGCAGATAGATGTCGCGTTGTACGAGTCAGTGTTCAACATGATGGAAAGCCTGATTCCCG
AGTATTCGGTATTCGATACTGTCCGCGAGCCGGCTGGCAGCAGCCTGCCAGGCATCGCGCCGAGCAATGCCTACCGCTGC
AATGACGGCAAGTACGCGTTGATCGCGGGCAATGGCGACAGTATCTTCCGGCGCCTGATGGAAAAGATCGGCCGCGCGGA
CCTGGCCAGCGACCCCGAGCTTGAGCACAACGACGGGCGGGTCAGGCACGTGGCGCGCATCGATGCGGCCATCTCGACCT
GGACCGCCGAACGCTCGATGGACGAAGTTCTTGCAGCGCTCAACGAGGCCCGTATTCCGGCAGGCAAGATCTACGACGCA
GCCGATATCGCCAGTGACCCGCATTATCAGGCGCGGGACATGCTGTTGCAGGGCACGCTGGATGACGGAACGCCCGTCAC
CCTTCCGGGTATTGTGCCTAAACTTCAAGACACGCCGGGGCAGGTACGATCGTCTGCGCCAACACTCGGTCAACACACCG
ATGCTGTGCTTGAAGCGCATGGCATCGACGCTGCCACCCGTGCCGAGTGGCGTCGGCTTGGCATTATCTGA

Upstream 100 bases:

>100_bases
GTTTTTTACGGCGGTCTGATCTGGAGGCGCACCTTCCGGCTTTCCATCCAGCGCATTTGCGCAGATCATTCCTCCACCTC
CCAACAAGAAAGGACGTGTC

Downstream 100 bases:

>100_bases
TCCGAAACCTGACCATTGTCGTAAACAGAACTCTATTCCAAACGGAGCTGATCCCGTGATTGATCATCTGGACCACCTGG
TACTGACCACTGCCGATATC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 396; Mature: 395

Protein sequence:

>396_residues
MSLPLQGIKVVELGQLIAGPFATKILAEFGAEVIKVEPPLTGDPLRKWRLLHNGTSVWWAVQSRNKQSVTLDLRQPQAQE
MARRLIRDADVLVENFRPGTLEGWGLSWEALHALNPKLIMLRVSGYGQTGPYRDRPGFGVIGEAMGGLRHLSGEAGRTPV
RVGVSIGDSLSALHGVIGILLALRHREQNGGDGQQIDVALYESVFNMMESLIPEYSVFDTVREPAGSSLPGIAPSNAYRC
NDGKYALIAGNGDSIFRRLMEKIGRADLASDPELEHNDGRVRHVARIDAAISTWTAERSMDEVLAALNEARIPAGKIYDA
ADIASDPHYQARDMLLQGTLDDGTPVTLPGIVPKLQDTPGQVRSSAPTLGQHTDAVLEAHGIDAATRAEWRRLGII

Sequences:

>Translated_396_residues
MSLPLQGIKVVELGQLIAGPFATKILAEFGAEVIKVEPPLTGDPLRKWRLLHNGTSVWWAVQSRNKQSVTLDLRQPQAQE
MARRLIRDADVLVENFRPGTLEGWGLSWEALHALNPKLIMLRVSGYGQTGPYRDRPGFGVIGEAMGGLRHLSGEAGRTPV
RVGVSIGDSLSALHGVIGILLALRHREQNGGDGQQIDVALYESVFNMMESLIPEYSVFDTVREPAGSSLPGIAPSNAYRC
NDGKYALIAGNGDSIFRRLMEKIGRADLASDPELEHNDGRVRHVARIDAAISTWTAERSMDEVLAALNEARIPAGKIYDA
ADIASDPHYQARDMLLQGTLDDGTPVTLPGIVPKLQDTPGQVRSSAPTLGQHTDAVLEAHGIDAATRAEWRRLGII
>Mature_395_residues
SLPLQGIKVVELGQLIAGPFATKILAEFGAEVIKVEPPLTGDPLRKWRLLHNGTSVWWAVQSRNKQSVTLDLRQPQAQEM
ARRLIRDADVLVENFRPGTLEGWGLSWEALHALNPKLIMLRVSGYGQTGPYRDRPGFGVIGEAMGGLRHLSGEAGRTPVR
VGVSIGDSLSALHGVIGILLALRHREQNGGDGQQIDVALYESVFNMMESLIPEYSVFDTVREPAGSSLPGIAPSNAYRCN
DGKYALIAGNGDSIFRRLMEKIGRADLASDPELEHNDGRVRHVARIDAAISTWTAERSMDEVLAALNEARIPAGKIYDAA
DIASDPHYQARDMLLQGTLDDGTPVTLPGIVPKLQDTPGQVRSSAPTLGQHTDAVLEAHGIDAATRAEWRRLGII

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=376, Percent_Identity=28.4574468085106, Blast_Score=175, Evalue=8e-44,
Organism=Homo sapiens, GI300863124, Length=325, Percent_Identity=30.1538461538462, Blast_Score=166, Evalue=4e-41,
Organism=Homo sapiens, GI300863126, Length=376, Percent_Identity=26.063829787234, Blast_Score=135, Evalue=8e-32,
Organism=Homo sapiens, GI13376042, Length=325, Percent_Identity=26.4615384615385, Blast_Score=123, Evalue=3e-28,
Organism=Homo sapiens, GI266456254, Length=384, Percent_Identity=28.3854166666667, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI42794625, Length=384, Percent_Identity=28.3854166666667, Blast_Score=120, Evalue=2e-27,
Organism=Homo sapiens, GI266458393, Length=265, Percent_Identity=32.0754716981132, Blast_Score=111, Evalue=1e-24,
Organism=Homo sapiens, GI266458397, Length=246, Percent_Identity=33.739837398374, Blast_Score=109, Evalue=3e-24,
Organism=Homo sapiens, GI266458395, Length=148, Percent_Identity=38.5135135135135, Blast_Score=96, Evalue=7e-20,
Organism=Homo sapiens, GI42822893, Length=148, Percent_Identity=39.8648648648649, Blast_Score=94, Evalue=2e-19,
Organism=Escherichia coli, GI87082093, Length=375, Percent_Identity=31.7333333333333, Blast_Score=211, Evalue=5e-56,
Organism=Escherichia coli, GI1788717, Length=411, Percent_Identity=27.4939172749392, Blast_Score=162, Evalue=3e-41,
Organism=Escherichia coli, GI1786222, Length=389, Percent_Identity=27.7634961439589, Blast_Score=141, Evalue=7e-35,
Organism=Caenorhabditis elegans, GI115535051, Length=278, Percent_Identity=31.6546762589928, Blast_Score=110, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI32564160, Length=260, Percent_Identity=29.6153846153846, Blast_Score=95, Evalue=6e-20,
Organism=Drosophila melanogaster, GI24648431, Length=379, Percent_Identity=32.7176781002639, Blast_Score=202, Evalue=3e-52,
Organism=Drosophila melanogaster, GI24585488, Length=364, Percent_Identity=27.1978021978022, Blast_Score=110, Evalue=2e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 42999; Mature: 42867

Theoretical pI: Translated: 6.19; Mature: 6.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLPLQGIKVVELGQLIAGPFATKILAEFGAEVIKVEPPLTGDPLRKWRLLHNGTSVWWA
CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEE
VQSRNKQSVTLDLRQPQAQEMARRLIRDADVLVENFRPGTLEGWGLSWEALHALNPKLIM
EECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCEEEE
LRVSGYGQTGPYRDRPGFGVIGEAMGGLRHLSGEAGRTPVRVGVSIGDSLSALHGVIGIL
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHH
LALRHREQNGGDGQQIDVALYESVFNMMESLIPEYSVFDTVREPAGSSLPGIAPSNAYRC
HHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEE
NDGKYALIAGNGDSIFRRLMEKIGRADLASDPELEHNDGRVRHVARIDAAISTWTAERSM
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
DEVLAALNEARIPAGKIYDAADIASDPHYQARDMLLQGTLDDGTPVTLPGIVPKLQDTPG
HHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHEECCCCCCCCEECCCCCCCCCCCCC
QVRSSAPTLGQHTDAVLEAHGIDAATRAEWRRLGII
HHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC
>Mature Secondary Structure 
SLPLQGIKVVELGQLIAGPFATKILAEFGAEVIKVEPPLTGDPLRKWRLLHNGTSVWWA
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHCCCCEEEEE
VQSRNKQSVTLDLRQPQAQEMARRLIRDADVLVENFRPGTLEGWGLSWEALHALNPKLIM
EECCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHCCCEEEE
LRVSGYGQTGPYRDRPGFGVIGEAMGGLRHLSGEAGRTPVRVGVSIGDSLSALHGVIGIL
EEECCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHHHH
LALRHREQNGGDGQQIDVALYESVFNMMESLIPEYSVFDTVREPAGSSLPGIAPSNAYRC
HHHHHCCCCCCCCCEEHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCEEE
NDGKYALIAGNGDSIFRRLMEKIGRADLASDPELEHNDGRVRHVARIDAAISTWTAERSM
CCCCEEEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCEEHHHHHHHHHHHHHHHHHH
DEVLAALNEARIPAGKIYDAADIASDPHYQARDMLLQGTLDDGTPVTLPGIVPKLQDTPG
HHHHHHHHHHCCCCCCCCCHHHHCCCCCHHHHHHHEECCCCCCCCEECCCCCCCCCCCCC
QVRSSAPTLGQHTDAVLEAHGIDAATRAEWRRLGII
HHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]