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The map label for this gene is rdgC [H]

Identifier: 66044833

GI number: 66044833

Start: 1787124

End: 1788044

Strand: Reverse

Name: rdgC [H]

Synonym: Psyr_1588

Alternate gene names: 66044833

Gene position: 1788044-1787124 (Counterclockwise)

Preceding gene: 66044837

Following gene: 66044832

Centisome position: 29.34

GC content: 60.59

Gene sequence:

>921_bases
ATGTGGTTCAAAAACCTGCTTGTCTATCGCCTGACCCAGGACGTGCCTTTTGATGCCGAAGCGCTGGAGACAGCACTGGC
GACCAAACCGGCGCGCGCCTGCGCCAGCCAGGAGGTAGCCACCTATGGTTTCGTCGCTCCTTTCGGCAAGGGCGAAGACG
CTCCATTGGTACACATCAGTCAGGACTTCATGCTGATCGCAGCACGCAAGGAAGAACGCATTCTGCCGGGCAGCGTCGTG
CGTGACGCGCTCAAGGAAAAGGTCGACGAGATCGAAGCCGAGCAGATGCGCAAGGTCTACAAGAAGGAACGCGATCAGCT
CAAGGATGAAATCATCCAGGCGTTCCTGCCGCGTGCGTTTATCCGTCGCTCCGCCACTTTCGCCGCCATCGCGCCGAAAC
AGGGCCTGATCCTGGTCAATGCCTCCAGCCCGAAACGCGCCGAGGACCTGTTGTCGACCCTGCGCGAAGTCATCGGCTCG
CTGCCGGTACGTCCGCTGACGGTCAAGGTTTCACCGAGTGCGACCATGACCGACTGGGTCAAGACCCAGAAAGCGGCCGA
CAACTTCTTCGTGCTGGACGAGTGCGAGCTGCGCGACACCCATGAAGATGGCGGCATCGTGCGCTGCAAGCGTCAGGACC
TGACCGGCGACGAAATCCAGCTGCACCTGAGCACAGGCAAGGTCGTGACCCAACTGTCGCTGGCCTGGCAGGACAAGCTG
TCGTTCGTGCTGGACGATAAACTGGTGGTCAAGCGTCTGAAGTTCGAGGACCTGCTGCAGGATCAGGCCGAACAGGACGG
TGGCGACGAAGCGTTGGGACAACTGGACGCCAGCTTCACGCTGATGATGCTGACCTTCGGCGAGTTCCTGCCGGAGCTGT
TCGAGGCATTGGGCGGCGAAGAGATTCCGCAGGGCATCTGA

Upstream 100 bases:

>100_bases
ATAATCCTTCCAAAGGCTTACAAACGCTCTGTACAGGGTTGGCCCCAGCGGCTGAGGAGCGAATAATGCCCGCCTTTGTA
TAGAAAGAGAGATTCACCTC

Downstream 100 bases:

>100_bases
TACCCGCTCTTGCAGCACTGCCGCTCGAAACACCGCGCCGTCTCGTCAGACGGCGCATTCATTTCACCCCGGTTATTCAA
CAATAAGGAACAGGCCATGC

Product: recombination associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MWFKNLLVYRLTQDVPFDAEALETALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFMLIAARKEERILPGSVV
RDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIRRSATFAAIAPKQGLILVNASSPKRAEDLLSTLREVIGS
LPVRPLTVKVSPSATMTDWVKTQKAADNFFVLDECELRDTHEDGGIVRCKRQDLTGDEIQLHLSTGKVVTQLSLAWQDKL
SFVLDDKLVVKRLKFEDLLQDQAEQDGGDEALGQLDASFTLMMLTFGEFLPELFEALGGEEIPQGI

Sequences:

>Translated_306_residues
MWFKNLLVYRLTQDVPFDAEALETALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFMLIAARKEERILPGSVV
RDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIRRSATFAAIAPKQGLILVNASSPKRAEDLLSTLREVIGS
LPVRPLTVKVSPSATMTDWVKTQKAADNFFVLDECELRDTHEDGGIVRCKRQDLTGDEIQLHLSTGKVVTQLSLAWQDKL
SFVLDDKLVVKRLKFEDLLQDQAEQDGGDEALGQLDASFTLMMLTFGEFLPELFEALGGEEIPQGI
>Mature_306_residues
MWFKNLLVYRLTQDVPFDAEALETALATKPARACASQEVATYGFVAPFGKGEDAPLVHISQDFMLIAARKEERILPGSVV
RDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAFIRRSATFAAIAPKQGLILVNASSPKRAEDLLSTLREVIGS
LPVRPLTVKVSPSATMTDWVKTQKAADNFFVLDECELRDTHEDGGIVRCKRQDLTGDEIQLHLSTGKVVTQLSLAWQDKL
SFVLDDKLVVKRLKFEDLLQDQAEQDGGDEALGQLDASFTLMMLTFGEFLPELFEALGGEEIPQGI

Specific function: May be involved in recombination [H]

COG id: COG2974

COG function: function code L; DNA recombination-dependent growth factor C

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rdgC family [H]

Homologues:

Organism=Escherichia coli, GI1786592, Length=300, Percent_Identity=46, Blast_Score=270, Evalue=1e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007476 [H]

Pfam domain/function: PF04381 RdgC [H]

EC number: NA

Molecular weight: Translated: 34183; Mature: 34183

Theoretical pI: Translated: 4.67; Mature: 4.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MWFKNLLVYRLTQDVPFDAEALETALATKPARACASQEVATYGFVAPFGKGEDAPLVHIS
CCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC
QDFMLIAARKEERILPGSVVRDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAF
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRRSATFAAIAPKQGLILVNASSPKRAEDLLSTLREVIGSLPVRPLTVKVSPSATMTDWV
HHCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
KTQKAADNFFVLDECELRDTHEDGGIVRCKRQDLTGDEIQLHLSTGKVVTQLSLAWQDKL
HHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHH
SFVLDDKLVVKRLKFEDLLQDQAEQDGGDEALGQLDASFTLMMLTFGEFLPELFEALGGE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCC
EIPQGI
CCCCCC
>Mature Secondary Structure
MWFKNLLVYRLTQDVPFDAEALETALATKPARACASQEVATYGFVAPFGKGEDAPLVHIS
CCHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEC
QDFMLIAARKEERILPGSVVRDALKEKVDEIEAEQMRKVYKKERDQLKDEIIQAFLPRAF
CCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRRSATFAAIAPKQGLILVNASSPKRAEDLLSTLREVIGSLPVRPLTVKVSPSATMTDWV
HHCCCCEEEECCCCCEEEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHH
KTQKAADNFFVLDECELRDTHEDGGIVRCKRQDLTGDEIQLHLSTGKVVTQLSLAWQDKL
HHHHCCCCEEEEECCCCCCCCCCCCEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHH
SFVLDDKLVVKRLKFEDLLQDQAEQDGGDEALGQLDASFTLMMLTFGEFLPELFEALGGE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCC
EIPQGI
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA