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The map label for this gene is yocS [H]

Identifier: 66044832

GI number: 66044832

Start: 1786080

End: 1787027

Strand: Reverse

Name: yocS [H]

Synonym: Psyr_1587

Alternate gene names: 66044832

Gene position: 1787027-1786080 (Counterclockwise)

Preceding gene: 66044833

Following gene: 66044830

Centisome position: 29.33

GC content: 59.49

Gene sequence:

>948_bases
ATGCGTGCGTTGGCAGCCTTGAGTCGTTTTGTCGGCAACACGTTTGCCTACTGGGTTTTGCTGTTCGCCATTCTGGCATT
TCTGTTTCCGCAGGCATTCATTGGCCTTAAGAGCTGGATCGTGCCGCTGCTGGGGCTGGTCATGTTCGGCATGGGCCTGA
CCCTGAAACTCGAAGACTTCTCTGAAGTGGCGCGTAACCCGTGGCGAGTGGCGCTGGGTGTGATCGCGCACTTTGTGATC
ATGCCCGGTGTGGCCTGGTTGCTGTGCCAGGTGTTTCAACTGCCGCCGGAGATCGCCGTGGGTGTGATTCTGGTCGGCTG
CTGTCCGAGCGGCACTTCATCCAACGTCATGGCCTGGCTGGCAAAGGGTGATCTGGCGCTGGCGGTAGCAATCGCTGCGG
TCACTACCCTGCTCGCCCCGCTGCTGACCCCGACCTTGATCTGGTTCCTGGCGTCGGCGTGGCTGCCGGTGTCCTTTCTG
GATATGTTCTGGTCGATCCTGCAACTGGTCATGCTGCCGATTGTGTTGGGCGTGATTGCCCAGCGTCTGTTGGGCGCGCG
GGTCAGCTATGCGGTCGATGTGCTGCCGCTGGTGTCGGTGGTCAGTATTGTGATGATCGTCTGCGCGGTGGTCGCCGCCA
GTCAGGCGAAAATCGCTGAATCCGGCCTGCTGATCATGGCGGTGGTGATTCTGCATAACACGTTCGGTTTTCTGCTGGGT
TATTTCACTGGCAAGGTTTTCAAGCTGCCATTGGCGCAACGCAAGTCGCTGGCGCTGGAGGTCGGTATGCAGAACTCGGG
GCTGGGCGCTGCGCTGGCCAGTGCACATTTTTCGCCGCTGGCGGCGGTGCCAAGTGCGCTGTTCAGTGTCTGGCACAATA
TTTCCGGGGCGTTGCTGTCGACGTATTTCAGGAAGATGCCGGAGGAAGAGAATACGTCCGTCCGTTGA

Upstream 100 bases:

>100_bases
CTGATACCCGCTCTTGCAGCACTGCCGCTCGAAACACCGCGCCGTCTCGTCAGACGGCGCATTCATTTCACCCCGGTTAT
TCAACAATAAGGAACAGGCC

Downstream 100 bases:

>100_bases
TGCCAGTTGACTATCGTTCCTCACGCTCCAGTGAACTGCCCCCAAAAAGTTGGACGGTTGACTATCGTTCCCATGCTCCG
CGTGGGAATGCAGTTCGTGA

Product: bile acid:sodium symporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MRALAALSRFVGNTFAYWVLLFAILAFLFPQAFIGLKSWIVPLLGLVMFGMGLTLKLEDFSEVARNPWRVALGVIAHFVI
MPGVAWLLCQVFQLPPEIAVGVILVGCCPSGTSSNVMAWLAKGDLALAVAIAAVTTLLAPLLTPTLIWFLASAWLPVSFL
DMFWSILQLVMLPIVLGVIAQRLLGARVSYAVDVLPLVSVVSIVMIVCAVVAASQAKIAESGLLIMAVVILHNTFGFLLG
YFTGKVFKLPLAQRKSLALEVGMQNSGLGAALASAHFSPLAAVPSALFSVWHNISGALLSTYFRKMPEEENTSVR

Sequences:

>Translated_315_residues
MRALAALSRFVGNTFAYWVLLFAILAFLFPQAFIGLKSWIVPLLGLVMFGMGLTLKLEDFSEVARNPWRVALGVIAHFVI
MPGVAWLLCQVFQLPPEIAVGVILVGCCPSGTSSNVMAWLAKGDLALAVAIAAVTTLLAPLLTPTLIWFLASAWLPVSFL
DMFWSILQLVMLPIVLGVIAQRLLGARVSYAVDVLPLVSVVSIVMIVCAVVAASQAKIAESGLLIMAVVILHNTFGFLLG
YFTGKVFKLPLAQRKSLALEVGMQNSGLGAALASAHFSPLAAVPSALFSVWHNISGALLSTYFRKMPEEENTSVR
>Mature_315_residues
MRALAALSRFVGNTFAYWVLLFAILAFLFPQAFIGLKSWIVPLLGLVMFGMGLTLKLEDFSEVARNPWRVALGVIAHFVI
MPGVAWLLCQVFQLPPEIAVGVILVGCCPSGTSSNVMAWLAKGDLALAVAIAAVTTLLAPLLTPTLIWFLASAWLPVSFL
DMFWSILQLVMLPIVLGVIAQRLLGARVSYAVDVLPLVSVVSIVMIVCAVVAASQAKIAESGLLIMAVVILHNTFGFLLG
YFTGKVFKLPLAQRKSLALEVGMQNSGLGAALASAHFSPLAAVPSALFSVWHNISGALLSTYFRKMPEEENTSVR

Specific function: Unknown

COG id: COG0385

COG function: function code R; Predicted Na+-dependent transporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:bile acid symporter family [H]

Homologues:

Organism=Homo sapiens, GI4506973, Length=244, Percent_Identity=28.2786885245902, Blast_Score=102, Evalue=4e-22,
Organism=Homo sapiens, GI37537552, Length=285, Percent_Identity=24.2105263157895, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI4506971, Length=265, Percent_Identity=24.9056603773585, Blast_Score=83, Evalue=3e-16,
Organism=Homo sapiens, GI58219066, Length=233, Percent_Identity=27.0386266094421, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI215422370, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI9790143, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=9e-14,
Organism=Homo sapiens, GI215422368, Length=228, Percent_Identity=28.0701754385965, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI24308414, Length=301, Percent_Identity=26.578073089701, Blast_Score=75, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004710
- InterPro:   IPR002657 [H]

Pfam domain/function: PF01758 SBF [H]

EC number: NA

Molecular weight: Translated: 33813; Mature: 33813

Theoretical pI: Translated: 9.27; Mature: 9.27

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRALAALSRFVGNTFAYWVLLFAILAFLFPQAFIGLKSWIVPLLGLVMFGMGLTLKLEDF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
SEVARNPWRVALGVIAHFVIMPGVAWLLCQVFQLPPEIAVGVILVGCCPSGTSSNVMAWL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCCCCCCCHHHHH
AKGDLALAVAIAAVTTLLAPLLTPTLIWFLASAWLPVSFLDMFWSILQLVMLPIVLGVIA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRLLGARVSYAVDVLPLVSVVSIVMIVCAVVAASQAKIAESGLLIMAVVILHNTFGFLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YFTGKVFKLPLAQRKSLALEVGMQNSGLGAALASAHFSPLAAVPSALFSVWHNISGALLS
HHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TYFRKMPEEENTSVR
HHHHHCCCCCCCCCC
>Mature Secondary Structure
MRALAALSRFVGNTFAYWVLLFAILAFLFPQAFIGLKSWIVPLLGLVMFGMGLTLKLEDF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEHHH
SEVARNPWRVALGVIAHFVIMPGVAWLLCQVFQLPPEIAVGVILVGCCPSGTSSNVMAWL
HHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHEECCCCCCCCCHHHHH
AKGDLALAVAIAAVTTLLAPLLTPTLIWFLASAWLPVSFLDMFWSILQLVMLPIVLGVIA
HCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHH
QRLLGARVSYAVDVLPLVSVVSIVMIVCAVVAASQAKIAESGLLIMAVVILHNTFGFLLG
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
YFTGKVFKLPLAQRKSLALEVGMQNSGLGAALASAHFSPLAAVPSALFSVWHNISGALLS
HHHHHHHCCCHHHHHHHHHHCCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
TYFRKMPEEENTSVR
HHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]