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The map label for this gene is xerC [H]

Identifier: 66044669

GI number: 66044669

Start: 1607964

End: 1609370

Strand: Reverse

Name: xerC [H]

Synonym: Psyr_1421

Alternate gene names: 66044669

Gene position: 1609370-1607964 (Counterclockwise)

Preceding gene: 66044670

Following gene: 66044651

Centisome position: 26.41

GC content: 55.65

Gene sequence:

>1407_bases
ATGAAACCGATGACGCTTCCGGAACTGACCCAGGAATACATACTCACTCATGACCTTAGGCCCGACACCGTCAAGATCTA
TTGGGCTGCCACAAAATCCTACGTCAGATTCTTCGGCGACTGCCTTGCCTGTGAGACGACCCACCGCGACATGCTTGACT
GGCGCAGGTCTGAGCTCGAGCGAATCTCCAAGCGCAGCTGGAACACGTACTCCAGCCATTTGCGCACCATCTACGGCTAT
GCAATCGAGCACGGGCTGCTGGAGCTGGTCGTCAACCCACTTAAAAACACGCGTGTGATGCCGCCCAAGCGCCCAAAAAA
GACAGTTGCGAACGACGCAAGCGTCCGCGCTCGTAACTGGCTGAGGATGCTGACCGCAGAGGAGCGTGCCACCGCGAAAC
GGACAGAAATTACACCTGCCTGGTTCTGGCTGAGCGTGTTCGAAACGTTCTATTACACGGGGATCAGGCTCAACGCGCTG
CTATGCCTGAGATATGCGGATGTATACCTGCGCGACCGGCTGATCAGAGTCAGAGGCGAAACGGAGAAGACTCATCGTGA
GTTCCTGATTCCTATCCCGGACGGCCTGATGGCTCAGCTAGAAACGCTTATGCAAGCAGCGAAGGCCTTGAGGTTCCAGC
CAGGTGACCAGTTGTTCAACGTAAACAGATTTTCAGGCCACTACCGCCGCCATGAGATGAACTCCAACCAAGTCGAGGCG
ATGTATAAAAAACTCACTGCGATGACCGGTATACGGATGACGCCTCACCGCTTCCGACACACGATCGCCAGTGAGCTAAT
GACGCTACCGGAGCGCAACATCTATCTGACCAAGAAATTGCTGAACCACTCGAATATAGCTACCACGATGGATTACATCG
AACCCGACTACGACATGATGCGGGAGGTGATGAATGAACGAGGAAAGCGGCCGGCCAAAATCAGCTACATGGCAAAACCG
GATGCGACGCTGCGTGCTGATAGACACCGATCAATATCTGCTCCAGTTAAGGACTTGACTGCGTCGACTAAGACTCGCGG
AACAACTGCAGAAGCCGAAAGCTCAGCTGGCCAGGCCTTGGCCAGGCCCCGCGCACTGCCTACACCGGTCTCGACCATGT
GCCCATCAACTGCTCCAGATACCAGGACAGTGAACCGCGACGAGACGCCCTCACCCACTAGTGACCGCGACACCGCAGTC
AGCCAGCTACCGTTAGGCTGCTCTAGTCCAGAAGATCTGTTGAGAAGCTTGGGGGAACTCACCAGGTGGGTACAGAACAA
CATTGCCGGCGGAGGAACTGGTGCTGAACCAGTGATCGAGGAAAGACCTGTCCCAAGCCAGGATGCTCGGCATCTACGCC
CGGAAATGCTGGAATTGGCGGGATGGATCGGCAGGTCAGGAACTTGA

Upstream 100 bases:

>100_bases
GGGGCTATCTGCTCATAGAGCCTACCGATGTTTTCAGCGAGGTGCCCTATGACAACCCGGTCATCAGCTTGGCAGAATTG
GTAGACAAGGACACATCTGA

Downstream 100 bases:

>100_bases
GTCTATGTAATCGACCACTATTTAGAGCGCAGTTATTCGGCGATGCTGTGCCGCGCCGGGACTATCGTCGGGATAGGACG
ATTTGCTCCGGCGCGATTTC

Product: Phage integrase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MKPMTLPELTQEYILTHDLRPDTVKIYWAATKSYVRFFGDCLACETTHRDMLDWRRSELERISKRSWNTYSSHLRTIYGY
AIEHGLLELVVNPLKNTRVMPPKRPKKTVANDASVRARNWLRMLTAEERATAKRTEITPAWFWLSVFETFYYTGIRLNAL
LCLRYADVYLRDRLIRVRGETEKTHREFLIPIPDGLMAQLETLMQAAKALRFQPGDQLFNVNRFSGHYRRHEMNSNQVEA
MYKKLTAMTGIRMTPHRFRHTIASELMTLPERNIYLTKKLLNHSNIATTMDYIEPDYDMMREVMNERGKRPAKISYMAKP
DATLRADRHRSISAPVKDLTASTKTRGTTAEAESSAGQALARPRALPTPVSTMCPSTAPDTRTVNRDETPSPTSDRDTAV
SQLPLGCSSPEDLLRSLGELTRWVQNNIAGGGTGAEPVIEERPVPSQDARHLRPEMLELAGWIGRSGT

Sequences:

>Translated_468_residues
MKPMTLPELTQEYILTHDLRPDTVKIYWAATKSYVRFFGDCLACETTHRDMLDWRRSELERISKRSWNTYSSHLRTIYGY
AIEHGLLELVVNPLKNTRVMPPKRPKKTVANDASVRARNWLRMLTAEERATAKRTEITPAWFWLSVFETFYYTGIRLNAL
LCLRYADVYLRDRLIRVRGETEKTHREFLIPIPDGLMAQLETLMQAAKALRFQPGDQLFNVNRFSGHYRRHEMNSNQVEA
MYKKLTAMTGIRMTPHRFRHTIASELMTLPERNIYLTKKLLNHSNIATTMDYIEPDYDMMREVMNERGKRPAKISYMAKP
DATLRADRHRSISAPVKDLTASTKTRGTTAEAESSAGQALARPRALPTPVSTMCPSTAPDTRTVNRDETPSPTSDRDTAV
SQLPLGCSSPEDLLRSLGELTRWVQNNIAGGGTGAEPVIEERPVPSQDARHLRPEMLELAGWIGRSGT
>Mature_468_residues
MKPMTLPELTQEYILTHDLRPDTVKIYWAATKSYVRFFGDCLACETTHRDMLDWRRSELERISKRSWNTYSSHLRTIYGY
AIEHGLLELVVNPLKNTRVMPPKRPKKTVANDASVRARNWLRMLTAEERATAKRTEITPAWFWLSVFETFYYTGIRLNAL
LCLRYADVYLRDRLIRVRGETEKTHREFLIPIPDGLMAQLETLMQAAKALRFQPGDQLFNVNRFSGHYRRHEMNSNQVEA
MYKKLTAMTGIRMTPHRFRHTIASELMTLPERNIYLTKKLLNHSNIATTMDYIEPDYDMMREVMNERGKRPAKISYMAKP
DATLRADRHRSISAPVKDLTASTKTRGTTAEAESSAGQALARPRALPTPVSTMCPSTAPDTRTVNRDETPSPTSDRDTAV
SQLPLGCSSPEDLLRSLGELTRWVQNNIAGGGTGAEPVIEERPVPSQDARHLRPEMLELAGWIGRSGT

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG0582

COG function: function code L; Integrase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 53513; Mature: 53513

Theoretical pI: Translated: 9.88; Mature: 9.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPMTLPELTQEYILTHDLRPDTVKIYWAATKSYVRFFGDCLACETTHRDMLDWRRSELE
CCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
RISKRSWNTYSSHLRTIYGYAIEHGLLELVVNPLKNTRVMPPKRPKKTVANDASVRARNW
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHH
LRMLTAEERATAKRTEITPAWFWLSVFETFYYTGIRLNALLCLRYADVYLRDRLIRVRGE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TEKTHREFLIPIPDGLMAQLETLMQAAKALRFQPGDQLFNVNRFSGHYRRHEMNSNQVEA
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHEECHHHCCHHHHHCCCCHHHHH
MYKKLTAMTGIRMTPHRFRHTIASELMTLPERNIYLTKKLLNHSNIATTMDYIEPDYDMM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCHHHHHHHCCCCHHHH
REVMNERGKRPAKISYMAKPDATLRADRHRSISAPVKDLTASTKTRGTTAEAESSAGQAL
HHHHHHHCCCCCEEEEEECCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHH
ARPRALPTPVSTMCPSTAPDTRTVNRDETPSPTSDRDTAVSQLPLGCSSPEDLLRSLGEL
HCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
TRWVQNNIAGGGTGAEPVIEERPVPSQDARHLRPEMLELAGWIGRSGT
HHHHHHCCCCCCCCCCCCHHCCCCCCHHHHHCCHHHHHHHHHHCCCCC
>Mature Secondary Structure
MKPMTLPELTQEYILTHDLRPDTVKIYWAATKSYVRFFGDCLACETTHRDMLDWRRSELE
CCCCCCHHHHHHHHHHCCCCCCEEEEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
RISKRSWNTYSSHLRTIYGYAIEHGLLELVVNPLKNTRVMPPKRPKKTVANDASVRARNW
HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCCCHHHHHHHH
LRMLTAEERATAKRTEITPAWFWLSVFETFYYTGIRLNALLCLRYADVYLRDRLIRVRGE
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCC
TEKTHREFLIPIPDGLMAQLETLMQAAKALRFQPGDQLFNVNRFSGHYRRHEMNSNQVEA
CCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCCCHHEECHHHCCHHHHHCCCCHHHHH
MYKKLTAMTGIRMTPHRFRHTIASELMTLPERNIYLTKKLLNHSNIATTMDYIEPDYDMM
HHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHHHCCCCHHHHHHHCCCCHHHH
REVMNERGKRPAKISYMAKPDATLRADRHRSISAPVKDLTASTKTRGTTAEAESSAGQAL
HHHHHHHCCCCCEEEEEECCCCHHHCCCCCCCCCCHHHHHHCCCCCCCCCHHHHHHHHHH
ARPRALPTPVSTMCPSTAPDTRTVNRDETPSPTSDRDTAVSQLPLGCSSPEDLLRSLGEL
HCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCHHHHHHHHHHH
TRWVQNNIAGGGTGAEPVIEERPVPSQDARHLRPEMLELAGWIGRSGT
HHHHHHCCCCCCCCCCCCHHCCCCCCHHHHHCCHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA