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The map label for this gene is ybgF [C]

Identifier: 66044665

GI number: 66044665

Start: 1601999

End: 1602745

Strand: Direct

Name: ybgF [C]

Synonym: Psyr_1417

Alternate gene names: 66044665

Gene position: 1601999-1602745 (Clockwise)

Preceding gene: 66044664

Following gene: 66044666

Centisome position: 26.29

GC content: 58.5

Gene sequence:

>747_bases
GTGGTCGATAACAATTCTGGCTCTGGCAGCAGCAGTTATCCGCCAGCGGGTTATGGCACGTCCGGCGCCTATGCCGGGGG
AGGGGTTACGGCCCCTGCCTCGGCACAAGGTCAGCTGTTCATGCAGCTGCAGCAGATGCAGGACGAAATCGCGCGTTTGC
GCGGTGTTGTCGAGGTCCAGCAAAATGACATCCAGCGCATGAAGCAGGAAGCTCTGGAGCGTTATCAGGAACTCGATCAA
CGTATAGCCAGTGGCTCAGCCGCTCCGGCTACCAATAATTCCCAACCTGCTGGTGGCGCTATCGACGCCGGCGGGACGCC
TTCGGCCCCCGCGGCTCAGCAGGCACCGGCAGCAGGCACCGAGCCTCCTGATCCGGCGAAGGAAAAGCTTTATTACGAAG
CCGCCTTCGATTTGATCAAGGCAAAGGATTTCGACAAGGCCAGCCAGGCCTTCACCGCTTTCCTGCGCAAATACCCAAAC
AGTTCGTATGCGGGCAATGCCCAATACTGGCTGGGTGAAGTCAATCTGGCCAAAGGCGACCTTCAGGGCGCCGGTCAGGC
GTTCGCCAAAGTCAGTCAACAGTATCCGAAGCATGCCAAGGTGCCTGATTCGCTGTACAAGCTGGCTGATGTCGAACGCC
GTCTGGGTCATACCGACAAGGTGAAAGGCATATTGCAGCAGGTCGTTGCCCAGTATCCTGGCACTTCAGCTGCACAATTG
GCGCAGCGAGATCTGCAGCGCCTTTGA

Upstream 100 bases:

>100_bases
TCGCGTCGAACTGCGTAAGTAATTTGACATGCGAACGTGCCGACGTGCTCTAACCGTTTTGGCCCTCGCCCTTCCGCTTT
CAGCGTTGGGTGCGGCACCT

Downstream 100 bases:

>100_bases
TGTGTTGACCCGCTGATCAAGAAAGCCGCGCTAGTCGCGGCTTTTTTCGTTAGAATCTCGCACCCGAAATTCCGGTACAC
CTTACGCTTTTCTGGATTCC

Product: TPR repeat-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 248; Mature: 248

Protein sequence:

>248_residues
MVDNNSGSGSSSYPPAGYGTSGAYAGGGVTAPASAQGQLFMQLQQMQDEIARLRGVVEVQQNDIQRMKQEALERYQELDQ
RIASGSAAPATNNSQPAGGAIDAGGTPSAPAAQQAPAAGTEPPDPAKEKLYYEAAFDLIKAKDFDKASQAFTAFLRKYPN
SSYAGNAQYWLGEVNLAKGDLQGAGQAFAKVSQQYPKHAKVPDSLYKLADVERRLGHTDKVKGILQQVVAQYPGTSAAQL
AQRDLQRL

Sequences:

>Translated_248_residues
MVDNNSGSGSSSYPPAGYGTSGAYAGGGVTAPASAQGQLFMQLQQMQDEIARLRGVVEVQQNDIQRMKQEALERYQELDQ
RIASGSAAPATNNSQPAGGAIDAGGTPSAPAAQQAPAAGTEPPDPAKEKLYYEAAFDLIKAKDFDKASQAFTAFLRKYPN
SSYAGNAQYWLGEVNLAKGDLQGAGQAFAKVSQQYPKHAKVPDSLYKLADVERRLGHTDKVKGILQQVVAQYPGTSAAQL
AQRDLQRL
>Mature_248_residues
MVDNNSGSGSSSYPPAGYGTSGAYAGGGVTAPASAQGQLFMQLQQMQDEIARLRGVVEVQQNDIQRMKQEALERYQELDQ
RIASGSAAPATNNSQPAGGAIDAGGTPSAPAAQQAPAAGTEPPDPAKEKLYYEAAFDLIKAKDFDKASQAFTAFLRKYPN
SSYAGNAQYWLGEVNLAKGDLQGAGQAFAKVSQQYPKHAKVPDSLYKLADVERRLGHTDKVKGILQQVVAQYPGTSAAQL
AQRDLQRL

Specific function: Unknown

COG id: COG1729

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ybgF [H]

Homologues:

Organism=Escherichia coli, GI1786963, Length=203, Percent_Identity=32.0197044334975, Blast_Score=104, Evalue=7e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014162
- InterPro:   IPR013026
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 26339; Mature: 26339

Theoretical pI: Translated: 7.63; Mature: 7.63

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVDNNSGSGSSSYPPAGYGTSGAYAGGGVTAPASAQGQLFMQLQQMQDEIARLRGVVEVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QNDIQRMKQEALERYQELDQRIASGSAAPATNNSQPAGGAIDAGGTPSAPAAQQAPAAGT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
EPPDPAKEKLYYEAAFDLIKAKDFDKASQAFTAFLRKYPNSSYAGNAQYWLGEVNLAKGD
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCC
LQGAGQAFAKVSQQYPKHAKVPDSLYKLADVERRLGHTDKVKGILQQVVAQYPGTSAAQL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
AQRDLQRL
HHHHHHCC
>Mature Secondary Structure
MVDNNSGSGSSSYPPAGYGTSGAYAGGGVTAPASAQGQLFMQLQQMQDEIARLRGVVEVQ
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
QNDIQRMKQEALERYQELDQRIASGSAAPATNNSQPAGGAIDAGGTPSAPAAQQAPAAGT
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCC
EPPDPAKEKLYYEAAFDLIKAKDFDKASQAFTAFLRKYPNSSYAGNAQYWLGEVNLAKGD
CCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCEEECCCCCCCCC
LQGAGQAFAKVSQQYPKHAKVPDSLYKLADVERRLGHTDKVKGILQQVVAQYPGTSAAQL
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
AQRDLQRL
HHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12534463 [H]