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The map label for this gene is ygcF [C]

Identifier: 66044666

GI number: 66044666

Start: 1602917

End: 1603564

Strand: Direct

Name: ygcF [C]

Synonym: Psyr_1418

Alternate gene names: 66044666

Gene position: 1602917-1603564 (Clockwise)

Preceding gene: 66044665

Following gene: 66044667

Centisome position: 26.3

GC content: 58.33

Gene sequence:

>648_bases
ATGCAAGACACATTACGCATCACCGAAATCTTTCACTCGCTGCAGGGTGAAACCCGTACGGCAGGCCTGCCCACCGTATT
TGTCCGCCTTACCGGCTGCCCGTTGCGCTGCCAGTACTGCGACAGTGCCTACGCGTTCAGCGGCGGCACCATTCAGACGC
TGGACGACATCCTTGGACAAGTGGCTTCCTATCGCCCTCGTTATGTCTGCGTCACCGGTGGCGAACCGCTCGCCCAGCCC
AATGCCATTGCGTTGCTGAAGCGTCTTTGCGACGCGGGCTATGAAGTATCGCTGGAGACCAGTGGTGCTTTGGACATCTC
GGCGGTGGATCCTCGTGTCAGTCGCGTCGTAGACCTCAAGACCCCGGGGTCAAAAGAAGTCTCGCGTAACCGCTACGAGA
ACATGGAGCTGCTGACGGCGAACGATCAGGTCAAATTCGTGATCTGCTCGCGTGAGGATTATGACTGGGCGGTTTCCAAG
CTGATCCAGTACGGTCTTGATCGTCGTGCGGGCGAAGTTCTGTTCTCGGCCAGTCACCACGAGCTCAAGGGCCGTGATCT
GGCGGATTGGATCGTGGCTGACAACCTGCCGGTACGCCTGCAGATGCAGTTGCATAAAATTCTTTGGGATGACGAGCCGG
GGCGCTGA

Upstream 100 bases:

>100_bases
CCGGTACACCTTACGCTTTTCTGGATTCCGCGATTGCCGAGTCCCTTGAAGTGCCTGACGGAGGCGGACGGCCTGTTTAG
CTGTTACGCCCGTGGCTGAT

Downstream 100 bases:

>100_bases
TATGAGTGAATTGACCAAGACTGAAAAAAGAGCCGTGATCCTCCTGTCTGGTGGCCTGGACTCTGCGACCGTCGTAGCCA
TGGCCCGCGCCGAGGGTTAC

Product: radical SAM family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPLRCQYCDSAYAFSGGTIQTLDDILGQVASYRPRYVCVTGGEPLAQP
NAIALLKRLCDAGYEVSLETSGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWAVSK
LIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKILWDDEPGR

Sequences:

>Translated_215_residues
MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPLRCQYCDSAYAFSGGTIQTLDDILGQVASYRPRYVCVTGGEPLAQP
NAIALLKRLCDAGYEVSLETSGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWAVSK
LIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKILWDDEPGR
>Mature_215_residues
MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPLRCQYCDSAYAFSGGTIQTLDDILGQVASYRPRYVCVTGGEPLAQP
NAIALLKRLCDAGYEVSLETSGALDISAVDPRVSRVVDLKTPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWAVSK
LIQYGLDRRAGEVLFSASHHELKGRDLADWIVADNLPVRLQMQLHKILWDDEPGR

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 24035; Mature: 24035

Theoretical pI: Translated: 5.34; Mature: 5.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPLRCQYCDSAYAFSGGTIQTLDDILGQ
CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCEEEECCCCHHHHHHHHHH
VASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLETSGALDISAVDPRVSRVVDLK
HHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHEEEECC
TPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWAVSKLIQYGLDRRAGEVLFSASHH
CCCCHHHHHHHHCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC
ELKGRDLADWIVADNLPVRLQMQLHKILWDDEPGR
CCCCCCHHHHHEECCCCEEEHEEHHHHHCCCCCCC
>Mature Secondary Structure
MQDTLRITEIFHSLQGETRTAGLPTVFVRLTGCPLRCQYCDSAYAFSGGTIQTLDDILGQ
CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCEEEEECCCEEEECCCCHHHHHHHHHH
VASYRPRYVCVTGGEPLAQPNAIALLKRLCDAGYEVSLETSGALDISAVDPRVSRVVDLK
HHCCCCCEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEECCCCEEEEECCCHHHEEEECC
TPGSKEVSRNRYENMELLTANDQVKFVICSREDYDWAVSKLIQYGLDRRAGEVLFSASHH
CCCCHHHHHHHHCCEEEEECCCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCCC
ELKGRDLADWIVADNLPVRLQMQLHKILWDDEPGR
CCCCCCHHHHHEECCCCEEEHEEHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]