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The map label for this gene is HrcJ [H]

Identifier: 66044446

GI number: 66044446

Start: 1355109

End: 1355915

Strand: Direct

Name: HrcJ [H]

Synonym: Psyr_1195

Alternate gene names: 66044446

Gene position: 1355109-1355915 (Clockwise)

Preceding gene: 66044445

Following gene: 66044447

Centisome position: 22.24

GC content: 60.47

Gene sequence:

>807_bases
GTGAAATTTCTGAGCGCAGGGCTGCTGCTGATTTGCATGGTATTGCTCGGCGGCTGCAGTGATGAAACCGATCTGTTCAC
CGGCTTGTCCGAGCAGGACTCCAACGAGGTCGTTGCCCGTCTTGCCGATCAGCATATCGACGCGCGTAAACGTCTGGAAA
AAACCGGCGTTGTCGTCACCGTCGCGACCAGCGACATGAACCGCGCCGTCAGGGTGCTCAATGCTGCCGGCCTGCCACGC
CAGTCTCGCGCCAGTCTGGGGGATATCTTCAAGAAAGAAGGGGTCATTTCGACCCCGCTCGAAGAGCGCGCCCGCTACAT
CTATGCCCTGTCTCAGGAACTCGAAGCGACGCTTTCGCAGATAGACGGCGTCATCGTTGCCAGGGTGCACGTGGTACTTC
CGGAACGCATCGCACCGGGTGAACCGGTGCAACCTGCCTCTGCTGCGGTGTTCATCAAACACTCCGCAGCGCTTGACCCG
GACAGCGTGCGTGGGCGCATTCAACAGATGGTCGCCAGCAGTATCCCCGGCATGTCGACGCAATCGGCAGAGTCGAAAAA
GTTTTCCATTGTGTTCGTACCGGCTACCGAGTTTCAGGAAACCACGCAGTGGGTCAGTTTCGGACCGTTCAAGCTGGACA
GCGCCAATCTGCCGTTCTGGAACCTGATGCTTTGGCTGGTACCGGTTGGCCTGGCGGTGTTGTTGCTGATCATCGCGCTG
CTGTTGCGCAGTGACTGGCGCGCCTCGGTCCTTGGGCGGATCGGCCTTGCCGGCCGTAGCCGCTCGACCGTACCGGCGCG
CGCCTGA

Upstream 100 bases:

>100_bases
CCCTGTCGCAATGCTCTTTGCAGACTGCGCTCACGACCAAGGTGGTGAGCAAGACTGCGCAGGCGCTCGACAAGCTGACT
AACTTGCAGTAGAGGTTTCC

Downstream 100 bases:

>100_bases
TGGACCTGACCGCCGAGGACTATTGGACTCAGTGGTGGTGCAACCCCTGGCCTTGGGCGCATCCAGGCTGGCAAAGCCGG
TTCGCTGAGCGCTGCGGACT

Product: type III secretion protein HrcJ

Products: NA

Alternate protein names: Lipoprotein ylpB [H]

Number of amino acids: Translated: 268; Mature: 268

Protein sequence:

>268_residues
MKFLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPR
QSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDP
DSVRGRIQQMVASSIPGMSTQSAESKKFSIVFVPATEFQETTQWVSFGPFKLDSANLPFWNLMLWLVPVGLAVLLLIIAL
LLRSDWRASVLGRIGLAGRSRSTVPARA

Sequences:

>Translated_268_residues
MKFLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPR
QSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDP
DSVRGRIQQMVASSIPGMSTQSAESKKFSIVFVPATEFQETTQWVSFGPFKLDSANLPFWNLMLWLVPVGLAVLLLIIAL
LLRSDWRASVLGRIGLAGRSRSTVPARA
>Mature_268_residues
MKFLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVTVATSDMNRAVRVLNAAGLPR
QSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDP
DSVRGRIQQMVASSIPGMSTQSAESKKFSIVFVPATEFQETTQWVSFGPFKLDSANLPFWNLMLWLVPVGLAVLLLIIAL
LLRSDWRASVLGRIGLAGRSRSTVPARA

Specific function: Required for the export process of the Yop proteins [H]

COG id: COG4669

COG function: function code U; Type III secretory pathway, lipoprotein EscJ

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yscJ lipoprotein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003282
- InterPro:   IPR006182 [H]

Pfam domain/function: PF01514 YscJ_FliF [H]

EC number: NA

Molecular weight: Translated: 29048; Mature: 29048

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVT
CCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEE
VATSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQ
EECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IDGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMST
HCCHHHHHHHHHHCHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
QSAESKKFSIVFVPATEFQETTQWVSFGPFKLDSANLPFWNLMLWLVPVGLAVLLLIIAL
CCCCCCEEEEEEEECHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
LLRSDWRASVLGRIGLAGRSRSTVPARA
HHCCCCHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MKFLSAGLLLICMVLLGGCSDETDLFTGLSEQDSNEVVARLADQHIDARKRLEKTGVVVT
CCHHHHHHHHHHHHHHCCCCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEE
VATSDMNRAVRVLNAAGLPRQSRASLGDIFKKEGVISTPLEERARYIYALSQELEATLSQ
EECCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
IDGVIVARVHVVLPERIAPGEPVQPASAAVFIKHSAALDPDSVRGRIQQMVASSIPGMST
HCCHHHHHHHHHHCHHCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCC
QSAESKKFSIVFVPATEFQETTQWVSFGPFKLDSANLPFWNLMLWLVPVGLAVLLLIIAL
CCCCCCEEEEEEEECHHHHHHHHHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHH
LLRSDWRASVLGRIGLAGRSRSTVPARA
HHCCCCHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1860816 [H]