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The map label for this gene is 66044447

Identifier: 66044447

GI number: 66044447

Start: 1355915

End: 1356442

Strand: Direct

Name: 66044447

Synonym: Psyr_1196

Alternate gene names: NA

Gene position: 1355915-1356442 (Clockwise)

Preceding gene: 66044446

Following gene: 66044448

Centisome position: 22.25

GC content: 63.64

Gene sequence:

>528_bases
ATGGACCTGACCGCCGAGGACTATTGGACTCAGTGGTGGTGCAACCCCTGGCCTTGGGCGCATCCAGGCTGGCAAAGCCG
GTTCGCTGAGCGCTGCGGACTGACCGTCAGCGACTGTGAAGCGCTCATGGTCAGCCGTCACGGCGTGTTTCTGCAGAGTG
TCGGCATCATGCCAAGTCAACCGCCAATGCCTGCAGAGCCGGTGTTGAACTGGCTGGCGCTGACACCCGCGCAGCGTGAT
CAGGCGCTGGATCTGGCGCAGCGCATCTGTTTTTCCCGTAACGAAAGCGACGGCGATGACGGGCAGTGGTGCTGGGCGCT
GACCAAGGCGTTGCGCCCTGGTGTCTGGCTGGAGCTGGAGCATGAAGATGCGCGCTTGCTGTTGGGTGCCTGGCTCGGGC
CTGAGTATTGGTCGCGATTGCGTCTGGCCTGGGCGCCCGATGAGGTCGCCGAGAGGCCTTGCGCGGCCCCCGAAAATAAA
CTTCAGACGCTGTGGCAGGCTGTTCTATGGCGTGTCACCGCGGCCTGA

Upstream 100 bases:

>100_bases
TGATCATCGCGCTGCTGTTGCGCAGTGACTGGCGCGCCTCGGTCCTTGGGCGGATCGGCCTTGCCGGCCGTAGCCGCTCG
ACCGTACCGGCGCGCGCCTG

Downstream 100 bases:

>100_bases
ATATCCGCTTCCCTCTGCATCAGGAATTCGCACCATGCTTGCCAAACGCAGTATTACCCTGACTGCCGACGCGGTGCTGC
CCGAGCCGGTATTGCGCCGT

Product: type III secretion protein HrpD

Products: NA

Alternate protein names: Type III Secretion Component Protein HrpD; Type III Secretion Protein

Number of amino acids: Translated: 175; Mature: 175

Protein sequence:

>175_residues
MDLTAEDYWTQWWCNPWPWAHPGWQSRFAERCGLTVSDCEALMVSRHGVFLQSVGIMPSQPPMPAEPVLNWLALTPAQRD
QALDLAQRICFSRNESDGDDGQWCWALTKALRPGVWLELEHEDARLLLGAWLGPEYWSRLRLAWAPDEVAERPCAAPENK
LQTLWQAVLWRVTAA

Sequences:

>Translated_175_residues
MDLTAEDYWTQWWCNPWPWAHPGWQSRFAERCGLTVSDCEALMVSRHGVFLQSVGIMPSQPPMPAEPVLNWLALTPAQRD
QALDLAQRICFSRNESDGDDGQWCWALTKALRPGVWLELEHEDARLLLGAWLGPEYWSRLRLAWAPDEVAERPCAAPENK
LQTLWQAVLWRVTAA
>Mature_175_residues
MDLTAEDYWTQWWCNPWPWAHPGWQSRFAERCGLTVSDCEALMVSRHGVFLQSVGIMPSQPPMPAEPVLNWLALTPAQRD
QALDLAQRICFSRNESDGDDGQWCWALTKALRPGVWLELEHEDARLLLGAWLGPEYWSRLRLAWAPDEVAERPCAAPENK
LQTLWQAVLWRVTAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20081; Mature: 20081

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
3.4 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLTAEDYWTQWWCNPWPWAHPGWQSRFAERCGLTVSDCEALMVSRHGVFLQSVGIMPSQ
CCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCCCCC
PPMPAEPVLNWLALTPAQRDQALDLAQRICFSRNESDGDDGQWCWALTKALRPGVWLELE
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
HEDARLLLGAWLGPEYWSRLRLAWAPDEVAERPCAAPENKLQTLWQAVLWRVTAA
CCCCEEHHHHHCCHHHHHHEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDLTAEDYWTQWWCNPWPWAHPGWQSRFAERCGLTVSDCEALMVSRHGVFLQSVGIMPSQ
CCCCCCHHHHHCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHCCCCCCC
PPMPAEPVLNWLALTPAQRDQALDLAQRICFSRNESDGDDGQWCWALTKALRPGVWLELE
CCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCEEEEE
HEDARLLLGAWLGPEYWSRLRLAWAPDEVAERPCAAPENKLQTLWQAVLWRVTAA
CCCCEEHHHHHCCHHHHHHEEECCCCHHHHHCCCCCCHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA