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The map label for this gene is ndpA [C]

Identifier: 66044336

GI number: 66044336

Start: 1224311

End: 1225312

Strand: Reverse

Name: ndpA [C]

Synonym: Psyr_1083

Alternate gene names: 66044336

Gene position: 1225312-1224311 (Counterclockwise)

Preceding gene: 66044338

Following gene: 66044335

Centisome position: 20.11

GC content: 58.98

Gene sequence:

>1002_bases
ATGCCGATCCGTCACTGCATCGTCCACCTGATCGAGAAGAAACCCGACGGTACGCCCGCTGTTCTCCATGCACGCGACTC
CGAACTCGCTGAGTCCCAGGCCATCGAGAACATGCTGGCCGACCTCAACGAAAGCTATAACGCCAAACAGGGCAAGGCAT
GGGGCCTGTTCCATCCCGAGTCCGGCGCACATCCATTCAGTGGCTGGCTGAAGGAATATATCGACGGCGGCAGCGACTTC
ACGGCGTTCTCCCGAATGGCAGTCGAGCACCTGCAAAAGCTCATGGAAGAATCCAATCTGTCAGTGGGTGGCCACGTGCT
GTTCGCCCATTATCAGCAAGGCATGACCGACTACCTGGCCATCGCCCTGCTGCACCACAGCGAAGGCGTGGCAGTGAATG
CCGAACTGGACGTGACCCCGTCCCGGCACCTGGACCTTGGCCAGTTGCACCTCGCCGCCCGAATCAATATTTCCGAGTGG
CAGAACAACAAGCAGTCCAAGCAATACATCTCGTTCATCAAGGGCAAGAACGGCAAGAAGGTTTCCGAGTACTTCCGCGA
CTTCATCGGTTGCCAGGAAGGCGTGGATGGCCCCGGCGAAACCCGCACGCTGCTCAAGGCGTTCAGCGATTTCGTCGAAA
GCGAAGACCTGCCGGAAGAATCGGCCCGCGAGAAGACCAAGACTCTGGTCGACTACGCCAGCAGTCAGAGCAAGATGGGC
GAACCGATGGGCCTGGAGGAACTGTCAGAGCTGATCGACGAAGAGCGTCCGCGTGCCTTCTACGATCACATTCGCAACAA
GGATTACGGCCTGTCCCCGGAAATACCGGCGGATAAGCGCACCCTCAACCAGTTCCGCCGCTTCACCGGCCGCGCCGAGG
GCCTGTCGATCAGTTTTGAAGCCCACCTGCTGGGCGACAAGATCGAATACGACGAAAGCGCCGGTACCCTGATCATCAAA
GGGCTGCCGACGCAACTGACCGACCAGTTGAAGCGACGGTAA

Upstream 100 bases:

>100_bases
CGAAAACCAGCCCGTCCGGGGCCATCAGGCGCATGCGTGCGTTACACTGGGCGTCTTGCAACGAGCTGCACGCTCTTCAC
CTTTTTCAGCCGAGAAGCCC

Downstream 100 bases:

>100_bases
CCGAGATGCTGCTGCGTACCCTCAAGAAGTTTGCCCTGATCATGCTGGTGGTCGTGATTTACCAGAACTGGGGCAGGATC
GAGCACTTCGTCAACCCGCC

Product: nucleoid-associated protein NdpA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 333; Mature: 332

Protein sequence:

>333_residues
MPIRHCIVHLIEKKPDGTPAVLHARDSELAESQAIENMLADLNESYNAKQGKAWGLFHPESGAHPFSGWLKEYIDGGSDF
TAFSRMAVEHLQKLMEESNLSVGGHVLFAHYQQGMTDYLAIALLHHSEGVAVNAELDVTPSRHLDLGQLHLAARINISEW
QNNKQSKQYISFIKGKNGKKVSEYFRDFIGCQEGVDGPGETRTLLKAFSDFVESEDLPEESAREKTKTLVDYASSQSKMG
EPMGLEELSELIDEERPRAFYDHIRNKDYGLSPEIPADKRTLNQFRRFTGRAEGLSISFEAHLLGDKIEYDESAGTLIIK
GLPTQLTDQLKRR

Sequences:

>Translated_333_residues
MPIRHCIVHLIEKKPDGTPAVLHARDSELAESQAIENMLADLNESYNAKQGKAWGLFHPESGAHPFSGWLKEYIDGGSDF
TAFSRMAVEHLQKLMEESNLSVGGHVLFAHYQQGMTDYLAIALLHHSEGVAVNAELDVTPSRHLDLGQLHLAARINISEW
QNNKQSKQYISFIKGKNGKKVSEYFRDFIGCQEGVDGPGETRTLLKAFSDFVESEDLPEESAREKTKTLVDYASSQSKMG
EPMGLEELSELIDEERPRAFYDHIRNKDYGLSPEIPADKRTLNQFRRFTGRAEGLSISFEAHLLGDKIEYDESAGTLIIK
GLPTQLTDQLKRR
>Mature_332_residues
PIRHCIVHLIEKKPDGTPAVLHARDSELAESQAIENMLADLNESYNAKQGKAWGLFHPESGAHPFSGWLKEYIDGGSDFT
AFSRMAVEHLQKLMEESNLSVGGHVLFAHYQQGMTDYLAIALLHHSEGVAVNAELDVTPSRHLDLGQLHLAARINISEWQ
NNKQSKQYISFIKGKNGKKVSEYFRDFIGCQEGVDGPGETRTLLKAFSDFVESEDLPEESAREKTKTLVDYASSQSKMGE
PMGLEELSELIDEERPRAFYDHIRNKDYGLSPEIPADKRTLNQFRRFTGRAEGLSISFEAHLLGDKIEYDESAGTLIIKG
LPTQLTDQLKRR

Specific function: Unknown

COG id: COG3081

COG function: function code R; Nucleoid-associated protein

Gene ontology:

Cell location: Cytoplasm, nucleoid [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the YejK family [H]

Homologues:

Organism=Escherichia coli, GI1788513, Length=334, Percent_Identity=35.6287425149701, Blast_Score=211, Evalue=4e-56,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007358 [H]

Pfam domain/function: PF04245 NA37 [H]

EC number: NA

Molecular weight: Translated: 37431; Mature: 37300

Theoretical pI: Translated: 5.57; Mature: 5.57

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPIRHCIVHLIEKKPDGTPAVLHARDSELAESQAIENMLADLNESYNAKQGKAWGLFHPE
CCHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCC
SGAHPFSGWLKEYIDGGSDFTAFSRMAVEHLQKLMEESNLSVGGHVLFAHYQQGMTDYLA
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHH
IALLHHSEGVAVNAELDVTPSRHLDLGQLHLAARINISEWQNNKQSKQYISFIKGKNGKK
HHHHCCCCCEEEEEEEECCCCCCCCHHHEEEEEEEEHHHHHCCHHHHHHHHHHHCCCCCH
VSEYFRDFIGCQEGVDGPGETRTLLKAFSDFVESEDLPEESAREKTKTLVDYASSQSKMG
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
EPMGLEELSELIDEERPRAFYDHIRNKDYGLSPEIPADKRTLNQFRRFTGRAEGLSISFE
CCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
AHLLGDKIEYDESAGTLIIKGLPTQLTDQLKRR
HEECCCCCCCCCCCCEEEEECCCHHHHHHHHCC
>Mature Secondary Structure 
PIRHCIVHLIEKKPDGTPAVLHARDSELAESQAIENMLADLNESYNAKQGKAWGLFHPE
CHHHHHHHHHHCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCC
SGAHPFSGWLKEYIDGGSDFTAFSRMAVEHLQKLMEESNLSVGGHVLFAHYQQGMTDYLA
CCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCHHHHHH
IALLHHSEGVAVNAELDVTPSRHLDLGQLHLAARINISEWQNNKQSKQYISFIKGKNGKK
HHHHCCCCCEEEEEEEECCCCCCCCHHHEEEEEEEEHHHHHCCHHHHHHHHHHHCCCCCH
VSEYFRDFIGCQEGVDGPGETRTLLKAFSDFVESEDLPEESAREKTKTLVDYASSQSKMG
HHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCC
EPMGLEELSELIDEERPRAFYDHIRNKDYGLSPEIPADKRTLNQFRRFTGRAEGLSISFE
CCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEE
AHLLGDKIEYDESAGTLIIKGLPTQLTDQLKRR
HEECCCCCCCCCCCCEEEEECCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA