The gene/protein map for NC_007005 is currently unavailable.
Definition Pseudomonas syringae pv. syringae B728a, complete genome.
Accession NC_007005
Length 6,093,698

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The map label for this gene is vdlC [H]

Identifier: 66044302

GI number: 66044302

Start: 1185160

End: 1185978

Strand: Reverse

Name: vdlC [H]

Synonym: Psyr_1049

Alternate gene names: 66044302

Gene position: 1185978-1185160 (Counterclockwise)

Preceding gene: 66044303

Following gene: 66044297

Centisome position: 19.46

GC content: 63.0

Gene sequence:

>819_bases
ATGCCCATCGCTTTGATTACAGGCTGTTCCAGCGGAATCGGCCGTGCTCTGGCCGACGCGTTCAAGGCCACCGGCTATGA
AGTCTGGGCCACTGCGCGCAAAGCCGACGATGTCGCGGCACTCAGTGCAGCCGGTTTCATCGCCGTACAACTGGACGTCA
ACGACAGCCTGGCGCTGGAGCAACTGGCCGCCGGTCTGGCGCACAGCGGCCTGGATGTGTTGATCAACAACGCGGGCTAT
GGCGCGATGGGTCCCCTGCTCGACGGCGGTGTGCAGGCCTTGCAGCGGCAGTTCGAAACCAATGTATTTTCCGTGGTGGG
GGTGACCCGGGCGTTGTTTCCGGCACTGCGCCGCAACAAGGGTCTGGTGGTGAACATCGGCAGCGTATCCGGTGTGCTGG
TCACGCCTTTCGCGGGGGCTTATTGCGCCTCCAAGGCGGCGGTGCATGCGCTCAGTGATGCACTGCGTCTGGAACTGGCG
CCGTTCGGCGTACAGGTGATGGAGGTTCAGCCCGGCGCGATCGCGTCGAGCTTTGCACAGAACGCCAGCCACGAAGCCGA
GCAGTTGATCAGCGAACAATCGCCGTGGTGGCCGATTCGCGAAGGCATTCGTGCACGCGCCAGGGCTTCTCTGGACAATC
CTACTCCCGTCACCGAATTCGCTCGCGACCTGCTCAGAGCCGTGCAACACACCCATCCGCCACGCCTGCTGCGCCTGGGC
AACGGCTCACGTCTGCTGCCGCTGATGGCGTGGTTGCTGCCCAAAGGTCTGCTGGATATGGGCCTGAGAAAACGCTTTGG
GCTGAACGCTGATCTGTAG

Upstream 100 bases:

>100_bases
GCCGGTGCCGGCACTGCGCAACGGGTACCGCCCGCAAACCCTGGAACTTCGCGCAGAACATCTACAAGGCAGTTTCTCGG
ACTGACCACAAGGATCTCCC

Downstream 100 bases:

>100_bases
CCGAGCCTTGTCACTATCGTGCCAATGCTCCGCGTTGGCATGCCGTTCTGGACGCTCTGCGTCCTCAAGTATCAGCCGTC
TACCGGCCTGACAATCACCG

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MPIALITGCSSGIGRALADAFKATGYEVWATARKADDVAALSAAGFIAVQLDVNDSLALEQLAAGLAHSGLDVLINNAGY
GAMGPLLDGGVQALQRQFETNVFSVVGVTRALFPALRRNKGLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRLELA
PFGVQVMEVQPGAIASSFAQNASHEAEQLISEQSPWWPIREGIRARARASLDNPTPVTEFARDLLRAVQHTHPPRLLRLG
NGSRLLPLMAWLLPKGLLDMGLRKRFGLNADL

Sequences:

>Translated_272_residues
MPIALITGCSSGIGRALADAFKATGYEVWATARKADDVAALSAAGFIAVQLDVNDSLALEQLAAGLAHSGLDVLINNAGY
GAMGPLLDGGVQALQRQFETNVFSVVGVTRALFPALRRNKGLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRLELA
PFGVQVMEVQPGAIASSFAQNASHEAEQLISEQSPWWPIREGIRARARASLDNPTPVTEFARDLLRAVQHTHPPRLLRLG
NGSRLLPLMAWLLPKGLLDMGLRKRFGLNADL
>Mature_271_residues
PIALITGCSSGIGRALADAFKATGYEVWATARKADDVAALSAAGFIAVQLDVNDSLALEQLAAGLAHSGLDVLINNAGYG
AMGPLLDGGVQALQRQFETNVFSVVGVTRALFPALRRNKGLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRLELAP
FGVQVMEVQPGAIASSFAQNASHEAEQLISEQSPWWPIREGIRARARASLDNPTPVTEFARDLLRAVQHTHPPRLLRLGN
GSRLLPLMAWLLPKGLLDMGLRKRFGLNADL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI223718074, Length=265, Percent_Identity=30.9433962264151, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI20149619, Length=266, Percent_Identity=30.8270676691729, Blast_Score=105, Evalue=5e-23,
Organism=Homo sapiens, GI119392083, Length=297, Percent_Identity=29.6296296296296, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI44680136, Length=213, Percent_Identity=31.924882629108, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI44680133, Length=213, Percent_Identity=31.924882629108, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI17738292, Length=213, Percent_Identity=31.924882629108, Blast_Score=98, Evalue=8e-21,
Organism=Homo sapiens, GI7657478, Length=185, Percent_Identity=35.1351351351351, Blast_Score=94, Evalue=9e-20,
Organism=Homo sapiens, GI150247226, Length=183, Percent_Identity=36.0655737704918, Blast_Score=93, Evalue=3e-19,
Organism=Homo sapiens, GI4504503, Length=286, Percent_Identity=27.972027972028, Blast_Score=92, Evalue=6e-19,
Organism=Homo sapiens, GI50726952, Length=280, Percent_Identity=31.4285714285714, Blast_Score=90, Evalue=3e-18,
Organism=Homo sapiens, GI40548397, Length=184, Percent_Identity=32.6086956521739, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI214010158, Length=184, Percent_Identity=32.6086956521739, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI214010156, Length=184, Percent_Identity=32.6086956521739, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI22758144, Length=184, Percent_Identity=32.6086956521739, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI19743808, Length=194, Percent_Identity=31.9587628865979, Blast_Score=86, Evalue=2e-17,
Organism=Homo sapiens, GI7706318, Length=194, Percent_Identity=27.8350515463918, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI109715829, Length=194, Percent_Identity=31.9587628865979, Blast_Score=86, Evalue=5e-17,
Organism=Homo sapiens, GI7705925, Length=195, Percent_Identity=30.7692307692308, Blast_Score=82, Evalue=4e-16,
Organism=Homo sapiens, GI22507405, Length=177, Percent_Identity=33.8983050847458, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI7705855, Length=281, Percent_Identity=26.3345195729537, Blast_Score=76, Evalue=4e-14,
Organism=Homo sapiens, GI32483357, Length=215, Percent_Identity=28.3720930232558, Blast_Score=71, Evalue=1e-12,
Organism=Homo sapiens, GI5031737, Length=190, Percent_Identity=31.0526315789474, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI32455239, Length=173, Percent_Identity=29.4797687861272, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI5031765, Length=173, Percent_Identity=29.4797687861272, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI33667109, Length=190, Percent_Identity=31.0526315789474, Blast_Score=65, Evalue=6e-11,
Organism=Escherichia coli, GI1786701, Length=184, Percent_Identity=39.6739130434783, Blast_Score=121, Evalue=4e-29,
Organism=Escherichia coli, GI1787820, Length=201, Percent_Identity=31.3432835820896, Blast_Score=93, Evalue=2e-20,
Organism=Escherichia coli, GI1787335, Length=200, Percent_Identity=32, Blast_Score=78, Evalue=6e-16,
Organism=Escherichia coli, GI87082100, Length=211, Percent_Identity=29.3838862559242, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1788459, Length=187, Percent_Identity=31.0160427807487, Blast_Score=67, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI71994600, Length=239, Percent_Identity=33.4728033472803, Blast_Score=107, Evalue=5e-24,
Organism=Caenorhabditis elegans, GI71994604, Length=199, Percent_Identity=35.1758793969849, Blast_Score=105, Evalue=2e-23,
Organism=Caenorhabditis elegans, GI17557780, Length=194, Percent_Identity=28.8659793814433, Blast_Score=81, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI115534660, Length=177, Percent_Identity=33.8983050847458, Blast_Score=80, Evalue=1e-15,
Organism=Caenorhabditis elegans, GI17562990, Length=219, Percent_Identity=31.5068493150685, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17551412, Length=200, Percent_Identity=30, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17560332, Length=196, Percent_Identity=30.1020408163265, Blast_Score=76, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI17559104, Length=192, Percent_Identity=32.2916666666667, Blast_Score=75, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI193210355, Length=192, Percent_Identity=29.6875, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=190, Percent_Identity=30.5263157894737, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17544670, Length=226, Percent_Identity=26.9911504424779, Blast_Score=75, Evalue=4e-14,
Organism=Caenorhabditis elegans, GI17538480, Length=200, Percent_Identity=29, Blast_Score=74, Evalue=7e-14,
Organism=Caenorhabditis elegans, GI17563726, Length=191, Percent_Identity=30.3664921465969, Blast_Score=74, Evalue=9e-14,
Organism=Caenorhabditis elegans, GI17562910, Length=192, Percent_Identity=32.2916666666667, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=186, Percent_Identity=30.6451612903226, Blast_Score=74, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17562904, Length=219, Percent_Identity=28.310502283105, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI193204405, Length=196, Percent_Identity=30.1020408163265, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562906, Length=197, Percent_Identity=32.48730964467, Blast_Score=72, Evalue=3e-13,
Organism=Caenorhabditis elegans, GI17562908, Length=197, Percent_Identity=30.9644670050761, Blast_Score=71, Evalue=7e-13,
Organism=Caenorhabditis elegans, GI32563809, Length=282, Percent_Identity=25.886524822695, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17507613, Length=282, Percent_Identity=25.886524822695, Blast_Score=70, Evalue=8e-13,
Organism=Caenorhabditis elegans, GI17538486, Length=200, Percent_Identity=33, Blast_Score=70, Evalue=9e-13,
Organism=Caenorhabditis elegans, GI17560150, Length=222, Percent_Identity=29.7297297297297, Blast_Score=70, Evalue=1e-12,
Organism=Caenorhabditis elegans, GI17565030, Length=197, Percent_Identity=32.994923857868, Blast_Score=69, Evalue=3e-12,
Organism=Caenorhabditis elegans, GI72000259, Length=208, Percent_Identity=29.3269230769231, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI17560220, Length=195, Percent_Identity=29.2307692307692, Blast_Score=66, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6322067, Length=278, Percent_Identity=31.6546762589928, Blast_Score=128, Evalue=8e-31,
Organism=Saccharomyces cerevisiae, GI6323882, Length=213, Percent_Identity=29.5774647887324, Blast_Score=88, Evalue=1e-18,
Organism=Drosophila melanogaster, GI21357041, Length=197, Percent_Identity=31.9796954314721, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI23397609, Length=187, Percent_Identity=34.7593582887701, Blast_Score=89, Evalue=4e-18,
Organism=Drosophila melanogaster, GI28571526, Length=194, Percent_Identity=33.5051546391753, Blast_Score=87, Evalue=9e-18,
Organism=Drosophila melanogaster, GI21358495, Length=196, Percent_Identity=31.1224489795918, Blast_Score=82, Evalue=4e-16,
Organism=Drosophila melanogaster, GI24651139, Length=217, Percent_Identity=30.4147465437788, Blast_Score=81, Evalue=7e-16,
Organism=Drosophila melanogaster, GI116007236, Length=197, Percent_Identity=31.4720812182741, Blast_Score=80, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24643142, Length=187, Percent_Identity=32.0855614973262, Blast_Score=79, Evalue=3e-15,
Organism=Drosophila melanogaster, GI116007238, Length=182, Percent_Identity=32.4175824175824, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24644339, Length=200, Percent_Identity=31, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24580925, Length=197, Percent_Identity=29.9492385786802, Blast_Score=75, Evalue=5e-14,
Organism=Drosophila melanogaster, GI24641232, Length=204, Percent_Identity=31.3725490196078, Blast_Score=72, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24584752, Length=185, Percent_Identity=27.5675675675676, Blast_Score=67, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24640442, Length=191, Percent_Identity=26.1780104712042, Blast_Score=66, Evalue=2e-11,
Organism=Drosophila melanogaster, GI24641388, Length=196, Percent_Identity=31.6326530612245, Blast_Score=66, Evalue=2e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 28751; Mature: 28619

Theoretical pI: Translated: 8.74; Mature: 8.74

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure: 

>Translated Secondary Structure
MPIALITGCSSGIGRALADAFKATGYEVWATARKADDVAALSAAGFIAVQLDVNDSLALE
CCEEEEECCCHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHCCEEEEEEECCCHHHHH
QLAAGLAHSGLDVLINNAGYGAMGPLLDGGVQALQRQFETNVFSVVGVTRALFPALRRNK
HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASSFAQ
CEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCHHHHHHHH
NASHEAEQLISEQSPWWPIREGIRARARASLDNPTPVTEFARDLLRAVQHTHPPRLLRLG
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEC
NGSRLLPLMAWLLPKGLLDMGLRKRFGLNADL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PIALITGCSSGIGRALADAFKATGYEVWATARKADDVAALSAAGFIAVQLDVNDSLALE
CEEEEECCCHHHHHHHHHHHHHCCHHEEHHHHHHHHHHHHHHCCEEEEEEECCCHHHHH
QLAAGLAHSGLDVLINNAGYGAMGPLLDGGVQALQRQFETNVFSVVGVTRALFPALRRNK
HHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
GLVVNIGSVSGVLVTPFAGAYCASKAAVHALSDALRLELAPFGVQVMEVQPGAIASSFAQ
CEEEEECCCCCEEECCCCHHHHHHHHHHHHHHHHHHHEECCCCEEEEEECCCHHHHHHHH
NASHEAEQLISEQSPWWPIREGIRARARASLDNPTPVTEFARDLLRAVQHTHPPRLLRLG
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEC
NGSRLLPLMAWLLPKGLLDMGLRKRFGLNADL
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9139899; 9252185 [H]