| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is alkK [H]
Identifier: 66044243
GI number: 66044243
Start: 1120149
End: 1121831
Strand: Direct
Name: alkK [H]
Synonym: Psyr_0990
Alternate gene names: 66044243
Gene position: 1120149-1121831 (Clockwise)
Preceding gene: 66044242
Following gene: 66044244
Centisome position: 18.38
GC content: 60.31
Gene sequence:
>1683_bases ATGTTACAGACTCGCGTTCTTCCGCCCGCCGATGGCGCGTATCAGTGCCCTCTGTTGATCAAGCGCCTGCTGTTGTCGGG CGGTCGTTATGAAAAGACGCGCGAAATCATCTACCGTGATTCGGTCCGCTACACCTACGCGACCCTCAACGAACGCATAT GCCGCCTCGCCAACGTACTGACAGCGGCGGGCGTGAAGGCTGGCGATACCGTGGCGGTTATGGACTGGGACAGCCACCGC TACCTGGAATGCATGTTCGCCATCCCGATGATTGGCGCGGTCATCCACACCGTCAATGTGCGACTTTCTCCCGAGCAGAT CGCCTACACCATCAACCACGCCGACGACCGTCTGGTGCTGGTGAATAGCGAGTTCACGGGACTCTATCAGGCGATGTCCG GACACCTGAGCACGGTCGAGAAGACCCTGTTGCTGACGGATTTGCCAGACAAGACTGCCGAGCTGCCCAACCTAGTGGGC GAGTACGAGACCCTGCTGGCGGCGGCCAGCCCCGAATACGTGTTCGAGGATTTCGACGAAAACTCGGTCGCCACCACGTT CTACACCACCGGCACCACTGGCAACCCCAAAGGGGTGTATTTCACCCACCGCCAACTGGTGCTGCACACCATGGGCGTGG CGACCATCATGGGCTGTATCGACAGCACCCGGCTGCTGGGCACCGATGACGTCTACATGCCCATCACGCCGATGTTTCAC GTGCACGCCTGGGGCATTCCCTATGCGGCAACCATGCTCGGTCTGAAACAGGTGTATCCGGGCCGCTACGATCCCGAGTT GCTGGTGGAGCTCTGGCGCAGGGAGAACGTCACCTTTTCCCATTGCGTGCCGACCATCTTGCAAATGCTGCTCAACGCCA AGTCTGCCCAGAACGTCGATTTCGGTGGCTGGAAGATCATCATTGGCGGCAGCTCCCTGACCCGCAGTCTGTATCAGGCC GCCAAATCCCGCGGCATCCAGCTCACTGCCGCCTACGGCATGTCTGAAACCGGACCACTCATATCCGTAGCGCACATCAA CGAAGAGTTGAAAGCCGGCAGTGAAGACGAGCGCATCACCTACCGGATCAAGGCCGGCGTGCCGGGAATGCTGGTGGAAG CCGCCATCATCGATCAGCAGGGCAACTTCCTCCCGGCCGACGGCGAAACCCAGGGAGAGCTGGTGCTGCGTGCGCCCTGG CTGACCGGAAGCTACTTTCGCGAGCCCGAAAAAGGCGCCGAGCTGTGGGCGGGCGGCTGGCTGCACACCGGTGATGTGGC GACGCTGGACGGCATGGGCTTCATCGACATTCGCGACCGCATCAAGGACGTGATCAAGACCGGTGGCGAATGGGTTTCGT CGCTGGAACTCGAAGATTTGTGCAGCCGCCACCCGGCAGTGCGCGAAGTGGCAGTGGTCGGCATCGCCGATCCGCAATGG GGAGAACGGCCGTTTGCCTTGCTGGTGATTCGCGATGGGCACCAGCTCGACGCTAAGGGTTTGAAGGAGCACCTCAAGCC GTTTGTTGAGCAAGGTCACATCAATAAGTGGGCGATTCCCAGCCAGATCGCGCTTGTTACCGAAATTCCCAAGACCAGCG TCGGCAAGCTGGACAAGAAACGCATGCGCCTGGACATCGTGGAGTGGCAAAGCAGCAACAGTGCCTTTCTCTCGACCCTC TGA
Upstream 100 bases:
>100_bases GCGTCTCGAAAAATCATCCCTTTTACTGATTTCACTGGCAGCCCGAGGCCCTAGAGTGCATATTTTCAGCACGCTTATGG ACTTTGAAAAAGGGCTTCAT
Downstream 100 bases:
>100_bases CACCTCGGGCATGCCGTATCCGTTGGCGACGGCACGTCTCTGCGCTGCAGGTCCTGCTCTGTGACTTGCCAAATTTGCAA ATTACGCCATCCTCCCCGCC
Product: long-chain-fatty-acid--CoA ligase
Products: D-carnitinyl-CoA; crotonobetainyl-CoA; L-carnitinyl-CoA [C]
Alternate protein names: Medium-chain acyl-CoA synthetase [H]
Number of amino acids: Translated: 560; Mature: 560
Protein sequence:
>560_residues MLQTRVLPPADGAYQCPLLIKRLLLSGGRYEKTREIIYRDSVRYTYATLNERICRLANVLTAAGVKAGDTVAVMDWDSHR YLECMFAIPMIGAVIHTVNVRLSPEQIAYTINHADDRLVLVNSEFTGLYQAMSGHLSTVEKTLLLTDLPDKTAELPNLVG EYETLLAAASPEYVFEDFDENSVATTFYTTGTTGNPKGVYFTHRQLVLHTMGVATIMGCIDSTRLLGTDDVYMPITPMFH VHAWGIPYAATMLGLKQVYPGRYDPELLVELWRRENVTFSHCVPTILQMLLNAKSAQNVDFGGWKIIIGGSSLTRSLYQA AKSRGIQLTAAYGMSETGPLISVAHINEELKAGSEDERITYRIKAGVPGMLVEAAIIDQQGNFLPADGETQGELVLRAPW LTGSYFREPEKGAELWAGGWLHTGDVATLDGMGFIDIRDRIKDVIKTGGEWVSSLELEDLCSRHPAVREVAVVGIADPQW GERPFALLVIRDGHQLDAKGLKEHLKPFVEQGHINKWAIPSQIALVTEIPKTSVGKLDKKRMRLDIVEWQSSNSAFLSTL
Sequences:
>Translated_560_residues MLQTRVLPPADGAYQCPLLIKRLLLSGGRYEKTREIIYRDSVRYTYATLNERICRLANVLTAAGVKAGDTVAVMDWDSHR YLECMFAIPMIGAVIHTVNVRLSPEQIAYTINHADDRLVLVNSEFTGLYQAMSGHLSTVEKTLLLTDLPDKTAELPNLVG EYETLLAAASPEYVFEDFDENSVATTFYTTGTTGNPKGVYFTHRQLVLHTMGVATIMGCIDSTRLLGTDDVYMPITPMFH VHAWGIPYAATMLGLKQVYPGRYDPELLVELWRRENVTFSHCVPTILQMLLNAKSAQNVDFGGWKIIIGGSSLTRSLYQA AKSRGIQLTAAYGMSETGPLISVAHINEELKAGSEDERITYRIKAGVPGMLVEAAIIDQQGNFLPADGETQGELVLRAPW LTGSYFREPEKGAELWAGGWLHTGDVATLDGMGFIDIRDRIKDVIKTGGEWVSSLELEDLCSRHPAVREVAVVGIADPQW GERPFALLVIRDGHQLDAKGLKEHLKPFVEQGHINKWAIPSQIALVTEIPKTSVGKLDKKRMRLDIVEWQSSNSAFLSTL >Mature_560_residues MLQTRVLPPADGAYQCPLLIKRLLLSGGRYEKTREIIYRDSVRYTYATLNERICRLANVLTAAGVKAGDTVAVMDWDSHR YLECMFAIPMIGAVIHTVNVRLSPEQIAYTINHADDRLVLVNSEFTGLYQAMSGHLSTVEKTLLLTDLPDKTAELPNLVG EYETLLAAASPEYVFEDFDENSVATTFYTTGTTGNPKGVYFTHRQLVLHTMGVATIMGCIDSTRLLGTDDVYMPITPMFH VHAWGIPYAATMLGLKQVYPGRYDPELLVELWRRENVTFSHCVPTILQMLLNAKSAQNVDFGGWKIIIGGSSLTRSLYQA AKSRGIQLTAAYGMSETGPLISVAHINEELKAGSEDERITYRIKAGVPGMLVEAAIIDQQGNFLPADGETQGELVLRAPW LTGSYFREPEKGAELWAGGWLHTGDVATLDGMGFIDIRDRIKDVIKTGGEWVSSLELEDLCSRHPAVREVAVVGIADPQW GERPFALLVIRDGHQLDAKGLKEHLKPFVEQGHINKWAIPSQIALVTEIPKTSVGKLDKKRMRLDIVEWQSSNSAFLSTL
Specific function: Could Catalyze The Transfer Of CoA To Crotonobetaine Or Carnitine. [C]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]
Homologues:
Organism=Homo sapiens, GI156151445, Length=550, Percent_Identity=26.7272727272727, Blast_Score=148, Evalue=2e-35, Organism=Homo sapiens, GI187761345, Length=559, Percent_Identity=28.0858676207513, Blast_Score=145, Evalue=1e-34, Organism=Homo sapiens, GI187761343, Length=559, Percent_Identity=28.0858676207513, Blast_Score=145, Evalue=1e-34, Organism=Homo sapiens, GI115511026, Length=524, Percent_Identity=24.618320610687, Blast_Score=119, Evalue=8e-27, Organism=Homo sapiens, GI28416953, Length=536, Percent_Identity=25.9328358208955, Blast_Score=118, Evalue=2e-26, Organism=Homo sapiens, GI38505220, Length=518, Percent_Identity=24.7104247104247, Blast_Score=113, Evalue=4e-25, Organism=Homo sapiens, GI42544132, Length=527, Percent_Identity=22.7703984819734, Blast_Score=105, Evalue=2e-22, Organism=Homo sapiens, GI58082049, Length=536, Percent_Identity=22.7611940298507, Blast_Score=101, Evalue=2e-21, Organism=Homo sapiens, GI157311624, Length=537, Percent_Identity=22.5325884543762, Blast_Score=97, Evalue=5e-20, Organism=Homo sapiens, GI157311622, Length=537, Percent_Identity=22.5325884543762, Blast_Score=97, Evalue=5e-20, Organism=Homo sapiens, GI122937307, Length=540, Percent_Identity=24.6296296296296, Blast_Score=96, Evalue=8e-20, Organism=Homo sapiens, GI227499619, Length=511, Percent_Identity=21.5264187866928, Blast_Score=86, Evalue=9e-17, Organism=Homo sapiens, GI13325057, Length=532, Percent_Identity=22.9323308270677, Blast_Score=74, Evalue=5e-13, Organism=Homo sapiens, GI40807357, Length=532, Percent_Identity=21.6165413533835, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI13236579, Length=500, Percent_Identity=22.4, Blast_Score=67, Evalue=4e-11, Organism=Escherichia coli, GI221142682, Length=511, Percent_Identity=28.9628180039139, Blast_Score=180, Evalue=2e-46, Organism=Escherichia coli, GI1788107, Length=528, Percent_Identity=27.2727272727273, Blast_Score=160, Evalue=2e-40, Organism=Escherichia coli, GI145693145, Length=524, Percent_Identity=25.381679389313, Blast_Score=157, Evalue=2e-39, Organism=Escherichia coli, GI1786810, Length=525, Percent_Identity=26.4761904761905, Blast_Score=120, Evalue=2e-28, Organism=Escherichia coli, GI1790505, Length=552, Percent_Identity=24.6376811594203, Blast_Score=105, Evalue=6e-24, Organism=Escherichia coli, GI1789201, Length=371, Percent_Identity=25.0673854447439, Blast_Score=83, Evalue=5e-17, Organism=Escherichia coli, GI1788595, Length=446, Percent_Identity=21.52466367713, Blast_Score=83, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17559526, Length=379, Percent_Identity=26.3852242744063, Blast_Score=127, Evalue=2e-29, Organism=Caenorhabditis elegans, GI17531443, Length=511, Percent_Identity=23.091976516634, Blast_Score=126, Evalue=3e-29, Organism=Caenorhabditis elegans, GI71994690, Length=544, Percent_Identity=24.0808823529412, Blast_Score=121, Evalue=8e-28, Organism=Caenorhabditis elegans, GI71994694, Length=544, Percent_Identity=24.0808823529412, Blast_Score=121, Evalue=9e-28, Organism=Caenorhabditis elegans, GI71994703, Length=544, Percent_Identity=24.0808823529412, Blast_Score=121, Evalue=9e-28, Organism=Caenorhabditis elegans, GI17558820, Length=509, Percent_Identity=24.950884086444, Blast_Score=121, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17538037, Length=509, Percent_Identity=23.1827111984283, Blast_Score=121, Evalue=1e-27, Organism=Caenorhabditis elegans, GI32563687, Length=507, Percent_Identity=25.0493096646943, Blast_Score=119, Evalue=3e-27, Organism=Caenorhabditis elegans, GI17557194, Length=527, Percent_Identity=23.3396584440228, Blast_Score=119, Evalue=3e-27, Organism=Caenorhabditis elegans, GI71996755, Length=514, Percent_Identity=24.3190661478599, Blast_Score=119, Evalue=5e-27, Organism=Caenorhabditis elegans, GI17560140, Length=526, Percent_Identity=22.4334600760456, Blast_Score=101, Evalue=1e-21, Organism=Caenorhabditis elegans, GI71985884, Length=365, Percent_Identity=23.013698630137, Blast_Score=100, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17560308, Length=537, Percent_Identity=23.463687150838, Blast_Score=91, Evalue=1e-18, Organism=Caenorhabditis elegans, GI71982997, Length=565, Percent_Identity=25.4867256637168, Blast_Score=80, Evalue=4e-15, Organism=Caenorhabditis elegans, GI71983001, Length=565, Percent_Identity=25.4867256637168, Blast_Score=79, Evalue=4e-15, Organism=Caenorhabditis elegans, GI25147511, Length=204, Percent_Identity=23.5294117647059, Blast_Score=70, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6319699, Length=374, Percent_Identity=27.5401069518717, Blast_Score=126, Evalue=9e-30, Organism=Saccharomyces cerevisiae, GI6323182, Length=550, Percent_Identity=24.7272727272727, Blast_Score=96, Evalue=1e-20, Organism=Saccharomyces cerevisiae, GI6319264, Length=564, Percent_Identity=24.468085106383, Blast_Score=85, Evalue=2e-17, Organism=Drosophila melanogaster, GI21355181, Length=520, Percent_Identity=24.6153846153846, Blast_Score=134, Evalue=1e-31, Organism=Drosophila melanogaster, GI18859661, Length=523, Percent_Identity=23.9005736137667, Blast_Score=114, Evalue=2e-25, Organism=Drosophila melanogaster, GI19922652, Length=520, Percent_Identity=23.6538461538462, Blast_Score=110, Evalue=3e-24, Organism=Drosophila melanogaster, GI24581924, Length=559, Percent_Identity=24.6869409660107, Blast_Score=107, Evalue=2e-23, Organism=Drosophila melanogaster, GI21356947, Length=547, Percent_Identity=21.5722120658135, Blast_Score=100, Evalue=3e-21, Organism=Drosophila melanogaster, GI24656500, Length=532, Percent_Identity=22.9323308270677, Blast_Score=96, Evalue=8e-20, Organism=Drosophila melanogaster, GI24653035, Length=468, Percent_Identity=23.2905982905983, Blast_Score=94, Evalue=3e-19, Organism=Drosophila melanogaster, GI62472339, Length=540, Percent_Identity=24.0740740740741, Blast_Score=94, Evalue=4e-19, Organism=Drosophila melanogaster, GI24667955, Length=547, Percent_Identity=23.7659963436929, Blast_Score=93, Evalue=5e-19, Organism=Drosophila melanogaster, GI24648257, Length=525, Percent_Identity=21.5238095238095, Blast_Score=89, Evalue=1e-17, Organism=Drosophila melanogaster, GI21356441, Length=516, Percent_Identity=20.9302325581395, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI161076582, Length=519, Percent_Identity=21.7726396917148, Blast_Score=88, Evalue=2e-17, Organism=Drosophila melanogaster, GI281365686, Length=323, Percent_Identity=23.2198142414861, Blast_Score=83, Evalue=5e-16, Organism=Drosophila melanogaster, GI24648260, Length=499, Percent_Identity=21.8436873747495, Blast_Score=81, Evalue=2e-15, Organism=Drosophila melanogaster, GI24648253, Length=500, Percent_Identity=20.6, Blast_Score=80, Evalue=3e-15, Organism=Drosophila melanogaster, GI24648255, Length=524, Percent_Identity=19.6564885496183, Blast_Score=79, Evalue=8e-15, Organism=Drosophila melanogaster, GI21358303, Length=249, Percent_Identity=25.7028112449799, Blast_Score=73, Evalue=5e-13, Organism=Drosophila melanogaster, GI24667959, Length=500, Percent_Identity=23.2, Blast_Score=72, Evalue=7e-13, Organism=Drosophila melanogaster, GI20130357, Length=370, Percent_Identity=23.7837837837838, Blast_Score=69, Evalue=1e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020845 - InterPro: IPR000873 [H]
Pfam domain/function: PF00501 AMP-binding [H]
EC number: 6.3.2.- [C]
Molecular weight: Translated: 62065; Mature: 62065
Theoretical pI: Translated: 5.88; Mature: 5.88
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.1 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.8 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 3.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLQTRVLPPADGAYQCPLLIKRLLLSGGRYEKTREIIYRDSVRYTYATLNERICRLANVL CCCCCCCCCCCCCEECHHHHHHHHHCCCCCHHHHHHHEECCCEEEHHHHHHHHHHHHHHH TAAGVKAGDTVAVMDWDSHRYLECMFAIPMIGAVIHTVNVRLSPEQIAYTINHADDRLVL HHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECHHHEEEEEECCCCEEEE VNSEFTGLYQAMSGHLSTVEKTLLLTDLPDKTAELPNLVGEYETLLAAASPEYVFEDFDE EECCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC NSVATTFYTTGTTGNPKGVYFTHRQLVLHTMGVATIMGCIDSTRLLGTDDVYMPITPMFH CCEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCCCEE VHAWGIPYAATMLGLKQVYPGRYDPELLVELWRRENVTFSHCVPTILQMLLNAKSAQNVD EEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC FGGWKIIIGGSSLTRSLYQAAKSRGIQLTAAYGMSETGPLISVAHINEELKAGSEDERIT CCCEEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEEECCHHHHCCCCCCEEE YRIKAGVPGMLVEAAIIDQQGNFLPADGETQGELVLRAPWLTGSYFREPEKGAELWAGGW EEEECCCCCCEEEEEEECCCCCEECCCCCCCCCEEEEECCCCCHHHCCCCCCCCEECCCC LHTGDVATLDGMGFIDIRDRIKDVIKTGGEWVSSLELEDLCSRHPAVREVAVVGIADPQW EECCCEEEECCCCEEHHHHHHHHHHHCCCHHHHHCCHHHHHCCCCCCEEEEEEEECCCCC GERPFALLVIRDGHQLDAKGLKEHLKPFVEQGHINKWAIPSQIALVTEIPKTSVGKLDKK CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHH RMRLDIVEWQSSNSAFLSTL HHEEEEEEECCCCCEEEECC >Mature Secondary Structure MLQTRVLPPADGAYQCPLLIKRLLLSGGRYEKTREIIYRDSVRYTYATLNERICRLANVL CCCCCCCCCCCCCEECHHHHHHHHHCCCCCHHHHHHHEECCCEEEHHHHHHHHHHHHHHH TAAGVKAGDTVAVMDWDSHRYLECMFAIPMIGAVIHTVNVRLSPEQIAYTINHADDRLVL HHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHEEEEECHHHEEEEEECCCCEEEE VNSEFTGLYQAMSGHLSTVEKTLLLTDLPDKTAELPNLVGEYETLLAAASPEYVFEDFDE EECCHHHHHHHHHHHHHHHHHEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCHHHHCCCC NSVATTFYTTGTTGNPKGVYFTHRQLVLHTMGVATIMGCIDSTRLLGTDDVYMPITPMFH CCEEEEEEEECCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCEEECCCCEEECCCCCEE VHAWGIPYAATMLGLKQVYPGRYDPELLVELWRRENVTFSHCVPTILQMLLNAKSAQNVD EEECCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCC FGGWKIIIGGSSLTRSLYQAAKSRGIQLTAAYGMSETGPLISVAHINEELKAGSEDERIT CCCEEEEECCCHHHHHHHHHHHHCCEEEEEECCCCCCCCEEEEEECCHHHHCCCCCCEEE YRIKAGVPGMLVEAAIIDQQGNFLPADGETQGELVLRAPWLTGSYFREPEKGAELWAGGW EEEECCCCCCEEEEEEECCCCCEECCCCCCCCCEEEEECCCCCHHHCCCCCCCCEECCCC LHTGDVATLDGMGFIDIRDRIKDVIKTGGEWVSSLELEDLCSRHPAVREVAVVGIADPQW EECCCEEEECCCCEEHHHHHHHHHHHCCCHHHHHCCHHHHHCCCCCCEEEEEEEECCCCC GERPFALLVIRDGHQLDAKGLKEHLKPFVEQGHINKWAIPSQIALVTEIPKTSVGKLDKK CCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCCCCCCHH RMRLDIVEWQSSNSAFLSTL HHEEEEEEECCCCCEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: Coenzyme A; D-carnitine; Coenzyme A; crotono-betaine; L-carnitine [C]
Specific reaction: Coenzyme A + D-carnitine = D-carnitinyl-CoA Coenzyme A + crotono-betaine = crotonobetainyl-CoA Coenzyme A + L-carnitine = L-carnitinyl-CoA [C]
General reaction: Ligases; Forming Carbon-Sulfur Bonds; Acid-Thiol Ligases [C]
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1453953 [H]