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The map label for this gene is rfbA [H]

Identifier: 66044172

GI number: 66044172

Start: 1042032

End: 1042826

Strand: Direct

Name: rfbA [H]

Synonym: Psyr_0917

Alternate gene names: 66044172

Gene position: 1042032-1042826 (Clockwise)

Preceding gene: 66044168

Following gene: 66044173

Centisome position: 17.1

GC content: 54.21

Gene sequence:

>795_bases
ATGTTGGAGCTGTTCAGAAGCCTTTGGGGTTACCGGGGATTCGTCTTTTCATCTATACGCAATGAGTTTTCCGCACGATT
CTCCCGTAGCCGCCTGGGTGGCCTGTGGATGATCATCAACCCGCTGGCACAGGTTGCGATCTACGCGCTGGTTCTCTCCA
ACGTTCTGGCTGCCAAACTACCCGGCATCGACAACAAGTATGCCTACGCGGTCTACCTGATGGCCGGTATGCTGGCCTGG
AGCTATTTTTCAGAGATCATCGGTCGTTGCCTGACACTGTTCATCGACCAGGGCAACCTGATGAAGAAGATGCGCTTTCC
GCGCATCACACTGCCGGTGATTGTCGCGGGTTCATGCCTGCTCAATTACGTACTGTTGTTTGCAGCCATTCTGCTGGTCT
TCGCTGCGTTGGGGCAATGGCCGCACTGGCAAATGTTGTGGCTGATCCCGCTGACTATCGTGATTACTGCGCTGGCCGTA
GGGCTGGGGTTGATTCTGGGCGTCTTGAACGTATTCATACGCGACGTTGGCCAGGTCATTCCCATTCTGCTGCAGGTATG
GTTCTGGTTTACCCCGATTGTCTACCCGCTCAACATCATCCCTGAACAATTCAAGAGTGTCATGGGCATCAATCCCATGT
TCCCGATCGTCAGTGCCTATCACGATGTTCTGGTTTATGCGCGAGCGCCTGATCTGCAAAGTATGGCCGTCATCGCCGTT
GTCGCTGCTGGGTTAATGCTGTTGGGTCTCTTCATGTTTCGCCGGGCGGCGCCGGAAATGGTGGATGTACTATGA

Upstream 100 bases:

>100_bases
AGCCTCTCACGGGGCGAGCCTCGACCAAGACCTTGAGTAACGTTGCGCGAAACGGAAACACTCAGGGTAAGCACGACTTC
ACCCTTTTCAGGAGTCATCA

Downstream 100 bases:

>100_bases
GCCTGCTAAGTGTCAGTAATCTGGGAAAGGCCTATCGCGTCTATGCCTCTGAGTTTCAGCGCATCGCTCGCTGGTTTGGC
ATACCCACCAAGCCAAGTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MLELFRSLWGYRGFVFSSIRNEFSARFSRSRLGGLWMIINPLAQVAIYALVLSNVLAAKLPGIDNKYAYAVYLMAGMLAW
SYFSEIIGRCLTLFIDQGNLMKKMRFPRITLPVIVAGSCLLNYVLLFAAILLVFAALGQWPHWQMLWLIPLTIVITALAV
GLGLILGVLNVFIRDVGQVIPILLQVWFWFTPIVYPLNIIPEQFKSVMGINPMFPIVSAYHDVLVYARAPDLQSMAVIAV
VAAGLMLLGLFMFRRAAPEMVDVL

Sequences:

>Translated_264_residues
MLELFRSLWGYRGFVFSSIRNEFSARFSRSRLGGLWMIINPLAQVAIYALVLSNVLAAKLPGIDNKYAYAVYLMAGMLAW
SYFSEIIGRCLTLFIDQGNLMKKMRFPRITLPVIVAGSCLLNYVLLFAAILLVFAALGQWPHWQMLWLIPLTIVITALAV
GLGLILGVLNVFIRDVGQVIPILLQVWFWFTPIVYPLNIIPEQFKSVMGINPMFPIVSAYHDVLVYARAPDLQSMAVIAV
VAAGLMLLGLFMFRRAAPEMVDVL
>Mature_264_residues
MLELFRSLWGYRGFVFSSIRNEFSARFSRSRLGGLWMIINPLAQVAIYALVLSNVLAAKLPGIDNKYAYAVYLMAGMLAW
SYFSEIIGRCLTLFIDQGNLMKKMRFPRITLPVIVAGSCLLNYVLLFAAILLVFAALGQWPHWQMLWLIPLTIVITALAV
GLGLILGVLNVFIRDVGQVIPILLQVWFWFTPIVYPLNIIPEQFKSVMGINPMFPIVSAYHDVLVYARAPDLQSMAVIAV
VAAGLMLLGLFMFRRAAPEMVDVL

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 29635; Mature: 29635

Theoretical pI: Translated: 9.85; Mature: 9.85

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.9 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHCCHHHHHCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]