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The map label for this gene is cph2 [H]

Identifier: 66044125

GI number: 66044125

Start: 991373

End: 992566

Strand: Reverse

Name: cph2 [H]

Synonym: Psyr_0870

Alternate gene names: 66044125

Gene position: 992566-991373 (Counterclockwise)

Preceding gene: 66044127

Following gene: 66044124

Centisome position: 16.29

GC content: 57.79

Gene sequence:

>1194_bases
ATGCTCGTTTCTGCCCTTGAACGTCCCAGCCTTGAAGATGCGCAACTCCTTGCCGAGGTCGAGCAGACGATCACTTCAGG
TGTTGGCTCGTTACGCTTCAGCCGTGTTCTTGAGCAACGCTATCAGGAAGAAACCCGGCTGCCGCGGCGCGAGTTCCTGA
CGGCGGTAGGGATTGGCGGCAGTCTGGTCTACAACCTGTTTCTGATCAGCGACTGGTTGATATTGCGGGATGTCTTTGCC
TATGTCGCGGTGGGCCGTCTGTGCCTGATTACGCCGATGTTTATCGCGCTGCTGATGCTGGCCCAACGGGTTGCTACGCG
CTGGGCGATGGAAACGATTGCAGCATTCGCCACGGTAGTGTGCTCGCTCATGCCAATGCTGGTCATGATTCACAGCGACA
GCCCTTATCAAATCTTTTATCAACTCGGCATGCTGTTGATCATGGTCTACTGCACCATGATCCAGCAATTGCCGTTGCGC
CATGCCGCTGTCGCCATGTTATGCATGCTGATCATCCAGTTGGTGACCACCTACATTGCCGACTTCGCCGATTTTGTGAT
CTGGCAGGCCAATGCCGTGTTGTTTGTTTCGACAGTGGCACTGTTGCTGATGGCCTCCTACTTTCTGGAGCGGGCAAGCC
GCATGAGCTACCTGTTTGCGCTTCGCGGACGCCTGCTTCAAGTGCAATTGATGGAGTTCGCGCGTACCGATGGGCTGACC
CGACTGTTCAATCGACGCTATCAGGACGAAGTGATGGCGTCAGTCTGGGAACACGCTCGCAATGCACCGGCGAACGTGGC
CATCATCCTGCTGGACATCGATCACTTCAAATCCTACAACGACAACTACGGTCATCCACAAGGGGATACCTGCCTCAGAT
TGCTCTGTCAGAAACTCCAGCAAAGCGCGCATGAGCATGGTGCTGTGGCGTTCCGGTTCGGCGGCGAAGAGGTGCTGGTG
CTGATGATCGGCGATGTCGTGCAGGCCAGGGAAGTGGCCGGGGCCCTGCAGAGCGCGGTTGCCGAGCTCAAGTTGCCGCA
TCCGGTGCTGGGCGAAAACGCGCTGGTCACCATCAGCCTCGGCGTGGCCTGTGCGACAGCGCCTCTGACCAGTGCCGAGA
ACCTGATTGGCGCGGCTGACAATGCCCTCTACGCAGCCAAGCGCGCCGGACGTAATTGCGTGTGCTTCGCGTGA

Upstream 100 bases:

>100_bases
CACCATCGGTCGACTTTGGTATGGCAGCAAGATACATTGATAGCACTAAGACATCACTCATGATGTCTTACGTCTCTCGA
TGTTAATGTCCCGGTGTCAC

Downstream 100 bases:

>100_bases
AATGACACCCCGCAGGATCCTGCTTTACGCCGCGCCCCTGCCACTTTAATCTCGGCGCACACCCAGGCTGGGAGCCATCG
CATGAGCATTCACATTGACG

Product: GGDEF

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MLVSALERPSLEDAQLLAEVEQTITSGVGSLRFSRVLEQRYQEETRLPRREFLTAVGIGGSLVYNLFLISDWLILRDVFA
YVAVGRLCLITPMFIALLMLAQRVATRWAMETIAAFATVVCSLMPMLVMIHSDSPYQIFYQLGMLLIMVYCTMIQQLPLR
HAAVAMLCMLIIQLVTTYIADFADFVIWQANAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLT
RLFNRRYQDEVMASVWEHARNAPANVAIILLDIDHFKSYNDNYGHPQGDTCLRLLCQKLQQSAHEHGAVAFRFGGEEVLV
LMIGDVVQAREVAGALQSAVAELKLPHPVLGENALVTISLGVACATAPLTSAENLIGAADNALYAAKRAGRNCVCFA

Sequences:

>Translated_397_residues
MLVSALERPSLEDAQLLAEVEQTITSGVGSLRFSRVLEQRYQEETRLPRREFLTAVGIGGSLVYNLFLISDWLILRDVFA
YVAVGRLCLITPMFIALLMLAQRVATRWAMETIAAFATVVCSLMPMLVMIHSDSPYQIFYQLGMLLIMVYCTMIQQLPLR
HAAVAMLCMLIIQLVTTYIADFADFVIWQANAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLT
RLFNRRYQDEVMASVWEHARNAPANVAIILLDIDHFKSYNDNYGHPQGDTCLRLLCQKLQQSAHEHGAVAFRFGGEEVLV
LMIGDVVQAREVAGALQSAVAELKLPHPVLGENALVTISLGVACATAPLTSAENLIGAADNALYAAKRAGRNCVCFA
>Mature_397_residues
MLVSALERPSLEDAQLLAEVEQTITSGVGSLRFSRVLEQRYQEETRLPRREFLTAVGIGGSLVYNLFLISDWLILRDVFA
YVAVGRLCLITPMFIALLMLAQRVATRWAMETIAAFATVVCSLMPMLVMIHSDSPYQIFYQLGMLLIMVYCTMIQQLPLR
HAAVAMLCMLIIQLVTTYIADFADFVIWQANAVLFVSTVALLLMASYFLERASRMSYLFALRGRLLQVQLMEFARTDGLT
RLFNRRYQDEVMASVWEHARNAPANVAIILLDIDHFKSYNDNYGHPQGDTCLRLLCQKLQQSAHEHGAVAFRFGGEEVLV
LMIGDVVQAREVAGALQSAVAELKLPHPVLGENALVTISLGVACATAPLTSAENLIGAADNALYAAKRAGRNCVCFA

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI1786584, Length=170, Percent_Identity=32.3529411764706, Blast_Score=91, Evalue=1e-19,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=33.9506172839506, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI145693134, Length=195, Percent_Identity=31.7948717948718, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1787541, Length=202, Percent_Identity=30.6930693069307, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=35.3658536585366, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI87081881, Length=178, Percent_Identity=33.7078651685393, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI1787802, Length=164, Percent_Identity=34.7560975609756, Blast_Score=72, Evalue=8e-14,
Organism=Escherichia coli, GI87082007, Length=226, Percent_Identity=30.0884955752212, Blast_Score=71, Evalue=1e-13,
Organism=Escherichia coli, GI87081977, Length=164, Percent_Identity=29.8780487804878, Blast_Score=65, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 44108; Mature: 44108

Theoretical pI: Translated: 6.50; Mature: 6.50

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.3 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.3 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
6.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEC
>Mature Secondary Structure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CHHHHHCCCCCHHHHHHCCCHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]