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The map label for this gene is yjjV [H]

Identifier: 66044074

GI number: 66044074

Start: 924634

End: 925428

Strand: Reverse

Name: yjjV [H]

Synonym: Psyr_0819

Alternate gene names: 66044074

Gene position: 925428-924634 (Counterclockwise)

Preceding gene: 66044075

Following gene: 66044070

Centisome position: 15.19

GC content: 64.4

Gene sequence:

>795_bases
GTGACGCTGATCGATACCCACACCCACCTGGATTTTCCGGACTTCGATGCCGACCGCACTCAGGTGCTGGAAAACTGCCT
GGCGCTCGGCGTGCAGCGCCTGGTGGTGCTCGGGGTGTATCAGCGTAACTGGCAGCGGCTCTGGGAGCTGACCGAGGCCA
ACCCTGCCCTGCACGCAGCGTTCGGCATGCATCCGGTGTACATCGATGAGCACCGCACTGCACACCTGACCGAGCTGGGC
GACTGGCTGACGCGCCTGCAAGGCCATCCGCAGCTGTGTGCGGTAGGTGAGATCGGTCTGGATTATTACGTCGAGCAGCC
GGACAAGGTGCGTCAGCAGGCGCTCTTTGACGCGCAATTGCAGTTGGCGAACGACTTCAACCTGCCCGCCTTGCTGCACG
TGCGACGCAGCCATGCCGATGTGATCGCGACGCTCAAGCGCCACAAGCCACAGCGCAGCGGCATCATTCATGCCTTTGCC
GGCAGCCGCGAAGAAGCGCGCGAATACATCAGGCTGGGGTTCAAACTGGGTCTGGGCGGCGCCGCGACCTGGCCGCAGGC
GCTGCGCATGCATCGGGTCATCGCCGAACTGCCGCTGGACAGCGTGGTGCTGGAAACCGACTCACCGGACATGGCGCCCG
CCATGCACCCCTATCAGCGCAACAGCCCGCAGCATTTGCCCGACATTTGCGAGGCCCTCGCGGGGCTGATGAAGATCAGC
CCCGAGCGCCTGGCCCAGGCGAGCACGGACAATGCCTGCGAACTGTTCGACTGGCCTCGCCTGTCACACACCTGA

Upstream 100 bases:

>100_bases
CCCTGCAACTGGCGCTGGCGGCTATCGAGAAGGATGACTACCAGCCAGGCGTGCATGCGATTGCCAGGGCCTTCAAGCAA
CGTATTCACGAGGCGTGAAT

Downstream 100 bases:

>100_bases
TGTCACATGCCTGAGCCTGCGCGGCCAGGATCGAATCAGAGCAGAAGGGTCCACAGGGCGAACCCCGCGTACCAGACCAC
CGCAGCACGTACCAGCAGCT

Product: TatD-related deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTLIDTHTHLDFPDFDADRTQVLENCLALGVQRLVVLGVYQRNWQRLWELTEANPALHAAFGMHPVYIDEHRTAHLTELG
DWLTRLQGHPQLCAVGEIGLDYYVEQPDKVRQQALFDAQLQLANDFNLPALLHVRRSHADVIATLKRHKPQRSGIIHAFA
GSREEAREYIRLGFKLGLGGAATWPQALRMHRVIAELPLDSVVLETDSPDMAPAMHPYQRNSPQHLPDICEALAGLMKIS
PERLAQASTDNACELFDWPRLSHT

Sequences:

>Translated_264_residues
MTLIDTHTHLDFPDFDADRTQVLENCLALGVQRLVVLGVYQRNWQRLWELTEANPALHAAFGMHPVYIDEHRTAHLTELG
DWLTRLQGHPQLCAVGEIGLDYYVEQPDKVRQQALFDAQLQLANDFNLPALLHVRRSHADVIATLKRHKPQRSGIIHAFA
GSREEAREYIRLGFKLGLGGAATWPQALRMHRVIAELPLDSVVLETDSPDMAPAMHPYQRNSPQHLPDICEALAGLMKIS
PERLAQASTDNACELFDWPRLSHT
>Mature_263_residues
TLIDTHTHLDFPDFDADRTQVLENCLALGVQRLVVLGVYQRNWQRLWELTEANPALHAAFGMHPVYIDEHRTAHLTELGD
WLTRLQGHPQLCAVGEIGLDYYVEQPDKVRQQALFDAQLQLANDFNLPALLHVRRSHADVIATLKRHKPQRSGIIHAFAG
SREEAREYIRLGFKLGLGGAATWPQALRMHRVIAELPLDSVVLETDSPDMAPAMHPYQRNSPQHLPDICEALAGLMKISP
ERLAQASTDNACELFDWPRLSHT

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349734, Length=276, Percent_Identity=31.1594202898551, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI110349730, Length=274, Percent_Identity=30.6569343065693, Blast_Score=106, Evalue=2e-23,
Organism=Homo sapiens, GI226061853, Length=279, Percent_Identity=30.4659498207885, Blast_Score=105, Evalue=4e-23,
Organism=Homo sapiens, GI226061614, Length=267, Percent_Identity=28.8389513108614, Blast_Score=93, Evalue=2e-19,
Organism=Homo sapiens, GI226061595, Length=229, Percent_Identity=30.1310043668122, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI14042943, Length=267, Percent_Identity=24.3445692883895, Blast_Score=88, Evalue=8e-18,
Organism=Homo sapiens, GI225903439, Length=235, Percent_Identity=25.531914893617, Blast_Score=80, Evalue=2e-15,
Organism=Homo sapiens, GI225903424, Length=227, Percent_Identity=25.9911894273128, Blast_Score=69, Evalue=4e-12,
Organism=Escherichia coli, GI87082439, Length=257, Percent_Identity=38.9105058365759, Blast_Score=189, Evalue=1e-49,
Organism=Escherichia coli, GI1787342, Length=267, Percent_Identity=31.8352059925094, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI48994985, Length=260, Percent_Identity=27.3076923076923, Blast_Score=96, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=283, Percent_Identity=26.5017667844523, Blast_Score=112, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71980746, Length=265, Percent_Identity=23.0188679245283, Blast_Score=84, Evalue=8e-17,
Organism=Drosophila melanogaster, GI24648690, Length=287, Percent_Identity=28.9198606271777, Blast_Score=102, Evalue=3e-22,
Organism=Drosophila melanogaster, GI221330018, Length=301, Percent_Identity=24.9169435215947, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24586117, Length=270, Percent_Identity=25.1851851851852, Blast_Score=82, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 29862; Mature: 29731

Theoretical pI: Translated: 6.34; Mature: 6.34

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLIDTHTHLDFPDFDADRTQVLENCLALGVQRLVVLGVYQRNWQRLWELTEANPALHAA
CCEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
FGMHPVYIDEHRTAHLTELGDWLTRLQGHPQLCAVGEIGLDYYVEQPDKVRQQALFDAQL
HCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHEECCHHHHHHHHHHHHHH
QLANDFNLPALLHVRRSHADVIATLKRHKPQRSGIIHAFAGSREEAREYIRLGFKLGLGG
HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCEEEEECCCHHHHHHHHHHHHHCCCCC
AATWPQALRMHRVIAELPLDSVVLETDSPDMAPAMHPYQRNSPQHLPDICEALAGLMKIS
CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHCC
PERLAQASTDNACELFDWPRLSHT
HHHHHHCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TLIDTHTHLDFPDFDADRTQVLENCLALGVQRLVVLGVYQRNWQRLWELTEANPALHAA
CEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
FGMHPVYIDEHRTAHLTELGDWLTRLQGHPQLCAVGEIGLDYYVEQPDKVRQQALFDAQL
HCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEECCCCCHHEECCHHHHHHHHHHHHHH
QLANDFNLPALLHVRRSHADVIATLKRHKPQRSGIIHAFAGSREEAREYIRLGFKLGLGG
HHCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHCCEEEEECCCHHHHHHHHHHHHHCCCCC
AATWPQALRMHRVIAELPLDSVVLETDSPDMAPAMHPYQRNSPQHLPDICEALAGLMKIS
CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHCCCCCCHHHHHHHHHHHHHCC
PERLAQASTDNACELFDWPRLSHT
HHHHHHCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]