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The map label for this gene is rbsB [H]

Identifier: 66044031

GI number: 66044031

Start: 880439

End: 881383

Strand: Reverse

Name: rbsB [H]

Synonym: Psyr_0776

Alternate gene names: 66044031

Gene position: 881383-880439 (Counterclockwise)

Preceding gene: 66044032

Following gene: 66044030

Centisome position: 14.46

GC content: 61.06

Gene sequence:

>945_bases
ATGCTGCGTTTGAGCAAGCGTTTCACCCTGACCCTCGGCGTTGTTTTGGCCTTGGCGTTGTCACCCATCATTCAGGCCCA
GACCGGCAAACGTCTGGCTCTGGTACAGGTCAACCAACAGGCGCTGTATTTCACCCAGATTACCCAAGGCGCACAGGCGG
CGGCGAAAGCTGCCGGAGCAGAGCTGGTGGTGTTCAACGCCAACGACAATCCGTCAGCCCAGAACGACGCCATCGAGGCC
TATATTCAGGACAAAGTCGACGCCATTCTGCTCTGCGCCATCGACGTCAACGGTATCAAGCCGGCAGTCACCGCAGCCGC
GCAGGCGGGAATCCCGGTGGTGGCAATCGATGCTGTGATCAATGGCGACAATGCCGTGCAGGTCGGCGTGGATAACCGCG
AGGCAGCCCGACAGATCGGCCAGTACACCGGCGAATACATCAACCGCGAACTGGCGGGCAAAGCCAGCATCGGCGTTGTC
GGAGCCCTCGGCTCTTATGTGCAGAATCTGCGTCTGGACGGCTTCCGCGAGGGTCTGGCGAAGACCGCCAGCCAGGCGAA
GATCGTCAATACCGTCGACGGTAACAATGTGCAGGACACCGCCCAGGCTGCGGCGGAAAACCTGCTGACCGCCAACCCTG
ATCTGCAGATCATTTATGCCACTGGCGAACCCGCCCTGATTGGCTCGGTTGCCGCGAGCGTGTCGCAAGGTGCGGGCGAG
CGGGTCAGGATTTTCGGGTGGGACCTGTCCTCTCAGGCAGTGCAGGGTCTGGATGACGGCTCTGTCGCGGTGGTGGTGCA
ACAGAATACCCAAGCCATGGGCAAGACGGCGGTGGAGTCGGCGCTGGCGCTGTTGTCCGGAAAGACCGTGGCTCGCGAAC
AGAGCATTCCCGTCACGCTGGTGACCAAAGCCAACCTGGCAGCCTATCGCGCCGAATTCAAATAA

Upstream 100 bases:

>100_bases
AACCTGAAGACAAAACTCATTTGTCTTTTTTTTGAGACAAATGGTAAACCGGTTTACCGATCTGATTTGCCACACCGGCG
ATCAGGCTAGGAGGATGGCA

Downstream 100 bases:

>100_bases
GGGGCTCAGCATGCAGACGCCTGGCGAAGTGCCTCGGGTACAGATGAGTGCCATCACTAAACACTACGGCTCGATAGCCT
CGTTACGCGGTGTCGATCTG

Product: periplasmic binding protein/LacI transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MLRLSKRFTLTLGVVLALALSPIIQAQTGKRLALVQVNQQALYFTQITQGAQAAAKAAGAELVVFNANDNPSAQNDAIEA
YIQDKVDAILLCAIDVNGIKPAVTAAAQAGIPVVAIDAVINGDNAVQVGVDNREAARQIGQYTGEYINRELAGKASIGVV
GALGSYVQNLRLDGFREGLAKTASQAKIVNTVDGNNVQDTAQAAAENLLTANPDLQIIYATGEPALIGSVAASVSQGAGE
RVRIFGWDLSSQAVQGLDDGSVAVVVQQNTQAMGKTAVESALALLSGKTVAREQSIPVTLVTKANLAAYRAEFK

Sequences:

>Translated_314_residues
MLRLSKRFTLTLGVVLALALSPIIQAQTGKRLALVQVNQQALYFTQITQGAQAAAKAAGAELVVFNANDNPSAQNDAIEA
YIQDKVDAILLCAIDVNGIKPAVTAAAQAGIPVVAIDAVINGDNAVQVGVDNREAARQIGQYTGEYINRELAGKASIGVV
GALGSYVQNLRLDGFREGLAKTASQAKIVNTVDGNNVQDTAQAAAENLLTANPDLQIIYATGEPALIGSVAASVSQGAGE
RVRIFGWDLSSQAVQGLDDGSVAVVVQQNTQAMGKTAVESALALLSGKTVAREQSIPVTLVTKANLAAYRAEFK
>Mature_314_residues
MLRLSKRFTLTLGVVLALALSPIIQAQTGKRLALVQVNQQALYFTQITQGAQAAAKAAGAELVVFNANDNPSAQNDAIEA
YIQDKVDAILLCAIDVNGIKPAVTAAAQAGIPVVAIDAVINGDNAVQVGVDNREAARQIGQYTGEYINRELAGKASIGVV
GALGSYVQNLRLDGFREGLAKTASQAKIVNTVDGNNVQDTAQAAAENLLTANPDLQIIYATGEPALIGSVAASVSQGAGE
RVRIFGWDLSSQAVQGLDDGSVAVVVQQNTQAMGKTAVESALALLSGKTVAREQSIPVTLVTKANLAAYRAEFK

Specific function: Involved in the high-affinity D-ribose membrane transport system [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1788898, Length=278, Percent_Identity=28.0575539568345, Blast_Score=86, Evalue=2e-18,
Organism=Escherichia coli, GI1790192, Length=299, Percent_Identity=27.0903010033445, Blast_Score=86, Evalue=3e-18,

Paralogues:

None

Copy number: 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 32582; Mature: 32582

Theoretical pI: Translated: 4.91; Mature: 4.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRLSKRFTLTLGVVLALALSPIIQAQTGKRLALVQVNQQALYFTQITQGAQAAAKAAGA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEHHHCCHHHHHHHCCC
ELVVFNANDNPSAQNDAIEAYIQDKVDAILLCAIDVNGIKPAVTAAAQAGIPVVAIDAVI
EEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEE
NGDNAVQVGVDNREAARQIGQYTGEYINRELAGKASIGVVGALGSYVQNLRLDGFREGLA
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
KTASQAKIVNTVDGNNVQDTAQAAAENLLTANPDLQIIYATGEPALIGSVAASVSQGAGE
HHHHCCEEEEECCCCCCHHHHHHHHHHHEECCCCEEEEEECCCCHHHHHHHHHHHCCCCC
RVRIFGWDLSSQAVQGLDDGSVAVVVQQNTQAMGKTAVESALALLSGKTVAREQSIPVTL
EEEEEEECCCHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHCCCCCEEE
VTKANLAAYRAEFK
EECCCHHHHHCCCC
>Mature Secondary Structure
MLRLSKRFTLTLGVVLALALSPIIQAQTGKRLALVQVNQQALYFTQITQGAQAAAKAAGA
CCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCEEEEEHHHCCHHHHHHHCCC
ELVVFNANDNPSAQNDAIEAYIQDKVDAILLCAIDVNGIKPAVTAAAQAGIPVVAIDAVI
EEEEEECCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCHHHHHHHHCCCCEEEEEEEE
NGDNAVQVGVDNREAARQIGQYTGEYINRELAGKASIGVVGALGSYVQNLRLDGFREGLA
CCCCEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
KTASQAKIVNTVDGNNVQDTAQAAAENLLTANPDLQIIYATGEPALIGSVAASVSQGAGE
HHHHCCEEEEECCCCCCHHHHHHHHHHHEECCCCEEEEEECCCCHHHHHHHHHHHCCCCC
RVRIFGWDLSSQAVQGLDDGSVAVVVQQNTQAMGKTAVESALALLSGKTVAREQSIPVTL
EEEEEEECCCHHHHCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCHHHCCCCCEEE
VTKANLAAYRAEFK
EECCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377; 7921236 [H]