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The map label for this gene is ynfL [H]

Identifier: 66043944

GI number: 66043944

Start: 767540

End: 768460

Strand: Reverse

Name: ynfL [H]

Synonym: Psyr_0677

Alternate gene names: 66043944

Gene position: 768460-767540 (Counterclockwise)

Preceding gene: 66043951

Following gene: 66043943

Centisome position: 12.61

GC content: 60.59

Gene sequence:

>921_bases
ATGAATATCCGTCGCTCCGACCCGGTGTCGCAGGTCAGTGATTTTGATATCCGCTTGCTGCGCCTATTCAAAAGCGTTGT
CGAGGCGGGTGGCTTTTCTGCGGCTGAAAGCGTGCTCGGCATTGGCCGATCAGCGATAAGCCAGCAGATGAGTGATCTGG
AACAACGCCTCGGCCTGCGCCTGTGCCAACGAGGCCGCGCCGGTTTTTCACTGACCGACGAAGGGCGCGAGGTTTATCAG
TCGTCGTTGCAACTGCTCAGCGCGCTGGAAAGTTTCAGGACAGAGGTCAACGGCCTGCACCAGAACCTGCGCGGCGAGCT
GAACATCGGCCTGACCGACAATCTGGTCACCCTCCCCCATATGCGCATCACCCATGCCCTGGCCCGGCTGAAAGAGCGCG
GGCCGGGCGTGCACATCAACATCCGCATGATCGCCCCCGCCGAAGTCGAGCGCGGTGTACTCGACGGCGGTCTGCATGTC
GGTGTCGTGCCACAGGCCAGCGCCTTGCCGGGGCTTGAGTATCATTCGTTGTACAGCGAGCGTTCGCTGCTCTATTGCGC
GGTCGGGCATCCCCTGTTTTACGTCGACAATGCGACGCTGGATGACGCACGCCTCGCACAACAGGAAGCCATCGCTCCGA
CCTTTCGCCTGCCCAACGATGTTCAGGACCACTATCAGGCGCTGACCTGCACGGCCAGCGCGTCGGACCGGGAGGGCATC
GCCTTCCTGATTCTGACCGGCCGCTACATAGGCTACTTGCCCGATCATTACGCCAACACCTGGGTGCAGGAAGGCAGGCT
GCGCGCATTGAAACCGGATTCGAAGTTTTACGACCTCAATCTGGTGACCGTTACCCGCAAAGGCCGACGCCCTCATTTGG
TGCTGGAGAGCTTTCTGGAAACACTTGCCGCTACCCGATGA

Upstream 100 bases:

>100_bases
TCGCAGGCGCTAAACGATCGGTCATTGCAGCCAAGGTGCCACGCGGCTAAAGTTCATAAAACCCGACTTTTACGATCTTT
GGTTTGGTAATCACTAAACA

Downstream 100 bases:

>100_bases
CACATTTATGCCCGGCACCTGGCCGGTTCGCCGACGCTGCAGAGCGCGTTGAAAGCGCTATCAGGCTGATATTTATTGAA
ATAACTGGACTCAAATAAAA

Product: regulatory protein, LysR:LysR, substrate-binding

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MNIRRSDPVSQVSDFDIRLLRLFKSVVEAGGFSAAESVLGIGRSAISQQMSDLEQRLGLRLCQRGRAGFSLTDEGREVYQ
SSLQLLSALESFRTEVNGLHQNLRGELNIGLTDNLVTLPHMRITHALARLKERGPGVHINIRMIAPAEVERGVLDGGLHV
GVVPQASALPGLEYHSLYSERSLLYCAVGHPLFYVDNATLDDARLAQQEAIAPTFRLPNDVQDHYQALTCTASASDREGI
AFLILTGRYIGYLPDHYANTWVQEGRLRALKPDSKFYDLNLVTVTRKGRRPHLVLESFLETLAATR

Sequences:

>Translated_306_residues
MNIRRSDPVSQVSDFDIRLLRLFKSVVEAGGFSAAESVLGIGRSAISQQMSDLEQRLGLRLCQRGRAGFSLTDEGREVYQ
SSLQLLSALESFRTEVNGLHQNLRGELNIGLTDNLVTLPHMRITHALARLKERGPGVHINIRMIAPAEVERGVLDGGLHV
GVVPQASALPGLEYHSLYSERSLLYCAVGHPLFYVDNATLDDARLAQQEAIAPTFRLPNDVQDHYQALTCTASASDREGI
AFLILTGRYIGYLPDHYANTWVQEGRLRALKPDSKFYDLNLVTVTRKGRRPHLVLESFLETLAATR
>Mature_306_residues
MNIRRSDPVSQVSDFDIRLLRLFKSVVEAGGFSAAESVLGIGRSAISQQMSDLEQRLGLRLCQRGRAGFSLTDEGREVYQ
SSLQLLSALESFRTEVNGLHQNLRGELNIGLTDNLVTLPHMRITHALARLKERGPGVHINIRMIAPAEVERGVLDGGLHV
GVVPQASALPGLEYHSLYSERSLLYCAVGHPLFYVDNATLDDARLAQQEAIAPTFRLPNDVQDHYQALTCTASASDREGI
AFLILTGRYIGYLPDHYANTWVQEGRLRALKPDSKFYDLNLVTVTRKGRRPHLVLESFLETLAATR

Specific function: Unknown

COG id: COG0583

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787879, Length=197, Percent_Identity=31.4720812182741, Blast_Score=77, Evalue=2e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33975; Mature: 33975

Theoretical pI: Translated: 7.34; Mature: 7.34

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIRRSDPVSQVSDFDIRLLRLFKSVVEAGGFSAAESVLGIGRSAISQQMSDLEQRLGLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LCQRGRAGFSLTDEGREVYQSSLQLLSALESFRTEVNGLHQNLRGELNIGLTDNLVTLPH
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEECCH
MRITHALARLKERGPGVHINIRMIAPAEVERGVLDGGLHVGVVPQASALPGLEYHSLYSE
HHHHHHHHHHHHCCCCEEEEEEEECCHHHHCCHHCCCCEEEECCCCCCCCCCHHHHHHCC
RSLLYCAVGHPLFYVDNATLDDARLAQQEAIAPTFRLPNDVQDHYQALTCTASASDREGI
CCEEEEEECCCEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHEEEECCCCCCCCE
AFLILTGRYIGYLPDHYANTWVQEGRLRALKPDSKFYDLNLVTVTRKGRRPHLVLESFLE
EEEEEECCHHCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEEEEECCCCCCHHHHHHHHH
TLAATR
HHHCCC
>Mature Secondary Structure
MNIRRSDPVSQVSDFDIRLLRLFKSVVEAGGFSAAESVLGIGRSAISQQMSDLEQRLGLR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHH
LCQRGRAGFSLTDEGREVYQSSLQLLSALESFRTEVNGLHQNLRGELNIGLTDNLVTLPH
HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCEEECCH
MRITHALARLKERGPGVHINIRMIAPAEVERGVLDGGLHVGVVPQASALPGLEYHSLYSE
HHHHHHHHHHHHCCCCEEEEEEEECCHHHHCCHHCCCCEEEECCCCCCCCCCHHHHHHCC
RSLLYCAVGHPLFYVDNATLDDARLAQQEAIAPTFRLPNDVQDHYQALTCTASASDREGI
CCEEEEEECCCEEEECCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHEEEECCCCCCCCE
AFLILTGRYIGYLPDHYANTWVQEGRLRALKPDSKFYDLNLVTVTRKGRRPHLVLESFLE
EEEEEECCHHCCCCHHHHHHHHHCCCCEEECCCCCEEEEEEEEEECCCCCCHHHHHHHHH
TLAATR
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]