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The map label for this gene is ybbI [C]

Identifier: 66043920

GI number: 66043920

Start: 741222

End: 741620

Strand: Reverse

Name: ybbI [C]

Synonym: Psyr_0653

Alternate gene names: 66043920

Gene position: 741620-741222 (Counterclockwise)

Preceding gene: 66043921

Following gene: 66043915

Centisome position: 12.17

GC content: 61.65

Gene sequence:

>399_bases
ATGAATATCGGTCAGGCGGCGAAAAACAGTGGCTTGAGCGCGAAGATGATCCGCTATTACGAGTCCATCGGTTTGCTGCA
AGCGGCCCATCGCAGCGAAAGCGGCTATCGCCTGTACAGCGCGGACGATCTGCACACACTGGCGTTCATCAAGCGCTCAA
GGGACCTGGGGTTTTCGCTGGAAGAGGTCGGCAAACTGCTGACTCTCTGGCAGGACCGCCAGCGAGCCAGCGCCGACGTC
AAGGCACTGGCCCGCCAGCACATCGCCGAGCTGAACCGCAAAATCGACGAACTGGCGAGCCTGCGCGACACGCTTCAGGA
ACTGGTGGAACACTGCCACGGCGACGACCGCCCCGACTGCCCGATCCTCAAGGACCTGGCATCGGGCAGGTGTTGCTAG

Upstream 100 bases:

>100_bases
CGGTATTGGCGGGCGCGGCCATGGCGCTGTCGAGCGTCAGCGTAGTGAGCAATGCGCTGCTGCTGAAAACCTGGAAACCC
CGCGACCTGGAGGACGCACC

Downstream 100 bases:

>100_bases
CCACTTCCACAAGGGTCTCACCGCATCCACTCGATAGAGCGCCTGCACGCGCTCCGTGGGAGCGAGCTTGCTAGCGAAAG
GGCCGGTACAGCCTTCGAAA

Product: regulatory protein, MerR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 132; Mature: 132

Protein sequence:

>132_residues
MNIGQAAKNSGLSAKMIRYYESIGLLQAAHRSESGYRLYSADDLHTLAFIKRSRDLGFSLEEVGKLLTLWQDRQRASADV
KALARQHIAELNRKIDELASLRDTLQELVEHCHGDDRPDCPILKDLASGRCC

Sequences:

>Translated_132_residues
MNIGQAAKNSGLSAKMIRYYESIGLLQAAHRSESGYRLYSADDLHTLAFIKRSRDLGFSLEEVGKLLTLWQDRQRASADV
KALARQHIAELNRKIDELASLRDTLQELVEHCHGDDRPDCPILKDLASGRCC
>Mature_132_residues
MNIGQAAKNSGLSAKMIRYYESIGLLQAAHRSESGYRLYSADDLHTLAFIKRSRDLGFSLEEVGKLLTLWQDRQRASADV
KALARQHIAELNRKIDELASLRDTLQELVEHCHGDDRPDCPILKDLASGRCC

Specific function: Copper responsive transcription regulator [C]

COG id: COG0789

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH merR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1786695, Length=132, Percent_Identity=46.969696969697, Blast_Score=128, Evalue=1e-31,
Organism=Escherichia coli, GI1789687, Length=130, Percent_Identity=35.3846153846154, Blast_Score=81, Evalue=2e-17,
Organism=Escherichia coli, GI1790498, Length=123, Percent_Identity=32.520325203252, Blast_Score=60, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011789
- InterPro:   IPR009061
- InterPro:   IPR000551
- InterPro:   IPR015358 [H]

Pfam domain/function: PF00376 MerR; PF09278 MerR-DNA-bind [H]

EC number: NA

Molecular weight: Translated: 14840; Mature: 14840

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: PS00552 HTH_MERR_1 ; PS50937 HTH_MERR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
3.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNIGQAAKNSGLSAKMIRYYESIGLLQAAHRSESGYRLYSADDLHTLAFIKRSRDLGFSL
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHCCCCCCH
EEVGKLLTLWQDRQRASADVKALARQHIAELNRKIDELASLRDTLQELVEHCHGDDRPDC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PILKDLASGRCC
HHHHHHHCCCCC
>Mature Secondary Structure
MNIGQAAKNSGLSAKMIRYYESIGLLQAAHRSESGYRLYSADDLHTLAFIKRSRDLGFSL
CCCCCHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCCEECCCCCHHHHHHHHHHCCCCCCH
EEVGKLLTLWQDRQRASADVKALARQHIAELNRKIDELASLRDTLQELVEHCHGDDRPDC
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
PILKDLASGRCC
HHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]