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The map label for this gene is xseB [H]

Identifier: 66043873

GI number: 66043873

Start: 696563

End: 696808

Strand: Reverse

Name: xseB [H]

Synonym: Psyr_0606

Alternate gene names: 66043873

Gene position: 696808-696563 (Counterclockwise)

Preceding gene: 66043874

Following gene: 66043872

Centisome position: 11.43

GC content: 61.79

Gene sequence:

>246_bases
ATGGCCCGCAAGAAAGCTGCACTGGATTTCGAACAGTCACTCGCTGATCTGCAAGCGCTGGTAGAGCGGCTGGAGAATGG
CGAGTTGTCGCTGGAAGACTCCCTGACCGCCTTCGAGCAAGGTGTACGCCTGACCCGCGACTGCCAGAGCGCCCTCACCC
AGGCCGAGCAGAAGGTTCAGGTGCTGCTGGAGCGCGATGGCGAGCTGAGCGAAGAGCCGTTCGACGATGCGGAACTCCCC
GAATGA

Upstream 100 bases:

>100_bases
CCGGCAGCCGCTTTAAGAGCGCGGCTCCGTCGCCGCAATTTGCCCAGACGCCATCGCTCTGCTAGTGTCGCGCGGTTTAA
CCTCTACCGGAAATGCCCTC

Downstream 100 bases:

>100_bases
TCGCGAGCTATCAAGCGCAAAGCCAGACTCGCGTCAACGCAGCACTCGACGGGCTGTTCAAGGCTCCGGGCCCTGAGCTC
GAACGCCTCTACCAAGCCAT

Product: exodeoxyribonuclease VII small subunit

Products: NA

Alternate protein names: Exodeoxyribonuclease VII small subunit; Exonuclease VII small subunit [H]

Number of amino acids: Translated: 81; Mature: 80

Protein sequence:

>81_residues
MARKKAALDFEQSLADLQALVERLENGELSLEDSLTAFEQGVRLTRDCQSALTQAEQKVQVLLERDGELSEEPFDDAELP
E

Sequences:

>Translated_81_residues
MARKKAALDFEQSLADLQALVERLENGELSLEDSLTAFEQGVRLTRDCQSALTQAEQKVQVLLERDGELSEEPFDDAELP
E
>Mature_80_residues
ARKKAALDFEQSLADLQALVERLENGELSLEDSLTAFEQGVRLTRDCQSALTQAEQKVQVLLERDGELSEEPFDDAELPE

Specific function: Bidirectionally degrades single-stranded DNA into large acid-insoluble oligonucleotides, which are then degraded further into small acid-soluble oligonucleotides [H]

COG id: COG1722

COG function: function code L; Exonuclease VII small subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the xseB family [H]

Homologues:

Organism=Escherichia coli, GI1786624, Length=72, Percent_Identity=45.8333333333333, Blast_Score=65, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003761
- ProDom:   PD028235 [H]

Pfam domain/function: PF02609 Exonuc_VII_S [H]

EC number: =3.1.11.6 [H]

Molecular weight: Translated: 9079; Mature: 8948

Theoretical pI: Translated: 3.88; Mature: 3.88

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARKKAALDFEQSLADLQALVERLENGELSLEDSLTAFEQGVRLTRDCQSALTQAEQKVQ
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VLLERDGELSEEPFDDAELPE
HHHHCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARKKAALDFEQSLADLQALVERLENGELSLEDSLTAFEQGVRLTRDCQSALTQAEQKVQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
VLLERDGELSEEPFDDAELPE
HHHHCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12928499 [H]