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The map label for this gene is yggS [C]

Identifier: 66043744

GI number: 66043744

Start: 515721

End: 516407

Strand: Reverse

Name: yggS [C]

Synonym: Psyr_0477

Alternate gene names: 66043744

Gene position: 516407-515721 (Counterclockwise)

Preceding gene: 66043746

Following gene: 66043743

Centisome position: 8.47

GC content: 61.28

Gene sequence:

>687_bases
ATGTCCACGATAGCAGCGAACATTTCAACGCTCGAACAGCGAATTCGCGACGCAGCGCTTGCCGCCGAGCGCGATCCGGC
GTCCGTCGGCCTACTGGCGGTGAGTAAAACCAAGCCTGCCAGTGACCTGCGTGAAGCTTACAACGCAGGCTTGCGCGATT
TTGGCGAAAATTATTTACAGGAAGCGCTGGGCAAACAGCTCGAACTGAGCGACCTGCCCTTGTGCTGGCACTTCATTGGC
CCCATTCAATCGAACAAGACGCGAGCTATCGCCGAGAACTTCGACTGGGTACATTCCGTGGACCGCCTGAAAATCGCGCA
ACGCCTGTCCGAGCAACGCCCCGAAGCGCTTGAACCGCTGAACATCTGCATTCAGGTGAACGTCAGTGGCGAGGCCAGCA
AGTCGGGCTGTACGCCTCAGGACCTGCCTGCGCTGGCCGCTACCATCATCGCCCTGCCGCGACTCAGGTTGCGCGGCCTG
ATGGCCATCCCCGAGCCCACAGACGATCCTGCGGCGCAGGACGCATCCTTCGCCGCCGTACGCGCGCTGCAGGAGCAGTT
GAACCTGGCGCTCGACACACTTTCCATGGGCATGAGCCACGACCTGGAAGCCGCCATTGCACAAGGCGCAACCTGGGTGC
GCATCGGCACCGCTCTTTTTGGCGCCCGCGACTATGGCCAGCCATAA

Upstream 100 bases:

>100_bases
CGCGCCCTGTTTGGCACTGAAGGCCAACAGCTCGGTAATATCCATACAGCTCCTCAATCACATAGAATGCCGCAGACCTT
AGCCTGACTGGCGCAAATCA

Downstream 100 bases:

>100_bases
ACTCTTCACAAGGACCCCTTCATGAGCAAGACCCGTATTGCCTTCGTCGGTGCCGGTAACATGGCCGCCAGCCTGATCGG
CGGCCTGCGCGCCCAGGGCG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 227

Protein sequence:

>228_residues
MSTIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYNAGLRDFGENYLQEALGKQLELSDLPLCWHFIG
PIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLNICIQVNVSGEASKSGCTPQDLPALAATIIALPRLRLRGL
MAIPEPTDDPAAQDASFAAVRALQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDYGQP

Sequences:

>Translated_228_residues
MSTIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYNAGLRDFGENYLQEALGKQLELSDLPLCWHFIG
PIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLNICIQVNVSGEASKSGCTPQDLPALAATIIALPRLRLRGL
MAIPEPTDDPAAQDASFAAVRALQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDYGQP
>Mature_227_residues
STIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYNAGLRDFGENYLQEALGKQLELSDLPLCWHFIGP
IQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPLNICIQVNVSGEASKSGCTPQDLPALAATIIALPRLRLRGLM
AIPEPTDDPAAQDASFAAVRALQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDYGQP

Specific function: Perhaps involved in proline biosynthesis [H]

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=243, Percent_Identity=37.8600823045267, Blast_Score=131, Evalue=4e-31,
Organism=Escherichia coli, GI1789321, Length=237, Percent_Identity=51.4767932489451, Blast_Score=232, Evalue=1e-62,
Organism=Caenorhabditis elegans, GI17533025, Length=222, Percent_Identity=36.036036036036, Blast_Score=113, Evalue=1e-25,
Organism=Saccharomyces cerevisiae, GI6319435, Length=212, Percent_Identity=36.3207547169811, Blast_Score=122, Evalue=5e-29,
Organism=Drosophila melanogaster, GI45550861, Length=211, Percent_Identity=42.654028436019, Blast_Score=139, Evalue=2e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 24625; Mature: 24494

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS01211 UPF0001

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSTIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYNAGLRDFGENYLQ
CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHH
EALGKQLELSDLPLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPL
HHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCE
NICIQVNVSGEASKSGCTPQDLPALAATIIALPRLRLRGLMAIPEPTDDPAAQDASFAAV
EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCHHHHHH
RALQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDYGQP
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHEEHHHHHHCCCCCCCC
>Mature Secondary Structure 
STIAANISTLEQRIRDAALAAERDPASVGLLAVSKTKPASDLREAYNAGLRDFGENYLQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHHHH
EALGKQLELSDLPLCWHFIGPIQSNKTRAIAENFDWVHSVDRLKIAQRLSEQRPEALEPL
HHHCCCCCCCCCCHHHHHHCCCCCCCHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCE
NICIQVNVSGEASKSGCTPQDLPALAATIIALPRLRLRGLMAIPEPTDDPAAQDASFAAV
EEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCHHHHHH
RALQEQLNLALDTLSMGMSHDLEAAIAQGATWVRIGTALFGARDYGQP
HHHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHEEHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1676385; 10984043; 2107123 [H]