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The map label for this gene is yecS [H]

Identifier: 66043567

GI number: 66043567

Start: 317179

End: 317844

Strand: Reverse

Name: yecS [H]

Synonym: Psyr_0297

Alternate gene names: 66043567

Gene position: 317844-317179 (Counterclockwise)

Preceding gene: 66043568

Following gene: 66043566

Centisome position: 5.22

GC content: 58.86

Gene sequence:

>666_bases
ATGGCTTATCACTTCGACTTCACACCGGTCCTGCAGAACCTCGACGTGCTGTTGCGTGGGGCTCTGTTCACGCTGGAACT
GACCGCTATAGGCACCTTGCTCGGTGTCAGCCTTGGCATTGTCGGTGCCGTCGTGAGGGCCTGGAAGATCCAGCCCTTTG
CGACGATCTTCGCCATCTATGTCGAGCTGATCCGCAATACACCGTTTCTGGTCCAGCTGTTCTTCATTTTCTTCGGTCTG
CCGTCGCTGGGCGTGCAGATCACGGAATGGCAGGCAGCGGTGCTGGCGATGGTTATCAACCTGGGTGCCTACTCGACCGA
AATCGTGCGGGCGGGTATCCAGGCGATTCCCAAGGGCCAGCTTGAAGCATCGGCTGCGCTGGCGATGAGTCGCTACGAAG
CCTTTCGCCACGTGGTGCTGGTTCCGGCGCTGGGCAAGGTCTGGCCGGCACTGAGCAGCCAGATCATCATCGTCATGCTC
GGCTCGGCAGTCTGCTCGCAGATTGCCACTGAAGAGCTGAGCTTCTTTGCCAACTTCATTCAGTCACGCAACTTCCGCTC
GTTCGAAACCTACATCGTGACCACGCTGATCTACCTGGCCATGGCGCTGTTGATCCGGCAACTGCTGGCCTGGATCGGAC
GTCGCTACATCTCGAGGAACCGCTGA

Upstream 100 bases:

>100_bases
AAGGCTGACGGTACGCTGGAAAAAGCGTCGCAGAAATGGCTGAAGGACCCGCTACCCGCCGATCTCTGATCACTGCTTTT
TTCGGTCACAGGATTCACCC

Downstream 100 bases:

>100_bases
TGGATTTCACCCTCTGGGACATCGTGCGCAATCTGCTGATCGGCCTGCAATGGACCGTGGCCTTGTCGCTGGTGGCGTTC
ATCGGCGGCGGGCTGATCGG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 221; Mature: 220

Protein sequence:

>221_residues
MAYHFDFTPVLQNLDVLLRGALFTLELTAIGTLLGVSLGIVGAVVRAWKIQPFATIFAIYVELIRNTPFLVQLFFIFFGL
PSLGVQITEWQAAVLAMVINLGAYSTEIVRAGIQAIPKGQLEASAALAMSRYEAFRHVVLVPALGKVWPALSSQIIIVML
GSAVCSQIATEELSFFANFIQSRNFRSFETYIVTTLIYLAMALLIRQLLAWIGRRYISRNR

Sequences:

>Translated_221_residues
MAYHFDFTPVLQNLDVLLRGALFTLELTAIGTLLGVSLGIVGAVVRAWKIQPFATIFAIYVELIRNTPFLVQLFFIFFGL
PSLGVQITEWQAAVLAMVINLGAYSTEIVRAGIQAIPKGQLEASAALAMSRYEAFRHVVLVPALGKVWPALSSQIIIVML
GSAVCSQIATEELSFFANFIQSRNFRSFETYIVTTLIYLAMALLIRQLLAWIGRRYISRNR
>Mature_220_residues
AYHFDFTPVLQNLDVLLRGALFTLELTAIGTLLGVSLGIVGAVVRAWKIQPFATIFAIYVELIRNTPFLVQLFFIFFGLP
SLGVQITEWQAAVLAMVINLGAYSTEIVRAGIQAIPKGQLEASAALAMSRYEAFRHVVLVPALGKVWPALSSQIIIVMLG
SAVCSQIATEELSFFANFIQSRNFRSFETYIVTTLIYLAMALLIRQLLAWIGRRYISRNR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=199, Percent_Identity=33.6683417085427, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787030, Length=214, Percent_Identity=32.2429906542056, Blast_Score=107, Evalue=8e-25,
Organism=Escherichia coli, GI1788646, Length=212, Percent_Identity=28.7735849056604, Blast_Score=84, Evalue=6e-18,
Organism=Escherichia coli, GI1786873, Length=221, Percent_Identity=26.6968325791855, Blast_Score=81, Evalue=5e-17,
Organism=Escherichia coli, GI1788645, Length=228, Percent_Identity=24.1228070175439, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1787086, Length=221, Percent_Identity=23.9819004524887, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI48994930, Length=186, Percent_Identity=30.6451612903226, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1787087, Length=223, Percent_Identity=24.6636771300448, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1786874, Length=170, Percent_Identity=27.6470588235294, Blast_Score=67, Evalue=1e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 24578; Mature: 24446

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAYHFDFTPVLQNLDVLLRGALFTLELTAIGTLLGVSLGIVGAVVRAWKIQPFATIFAIY
CCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VELIRNTPFLVQLFFIFFGLPSLGVQITEWQAAVLAMVINLGAYSTEIVRAGIQAIPKGQ
HHHHHCCHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
LEASAALAMSRYEAFRHVVLVPALGKVWPALSSQIIIVMLGSAVCSQIATEELSFFANFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QSRNFRSFETYIVTTLIYLAMALLIRQLLAWIGRRYISRNR
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AYHFDFTPVLQNLDVLLRGALFTLELTAIGTLLGVSLGIVGAVVRAWKIQPFATIFAIY
CEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
VELIRNTPFLVQLFFIFFGLPSLGVQITEWQAAVLAMVINLGAYSTEIVRAGIQAIPKGQ
HHHHHCCHHHHHHHHHHHCCHHCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC
LEASAALAMSRYEAFRHVVLVPALGKVWPALSSQIIIVMLGSAVCSQIATEELSFFANFI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QSRNFRSFETYIVTTLIYLAMALLIRQLLAWIGRRYISRNR
HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]