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The map label for this gene is yecS [H]

Identifier: 66043566

GI number: 66043566

Start: 316532

End: 317179

Strand: Reverse

Name: yecS [H]

Synonym: Psyr_0296

Alternate gene names: 66043566

Gene position: 317179-316532 (Counterclockwise)

Preceding gene: 66043567

Following gene: 66043565

Centisome position: 5.21

GC content: 61.11

Gene sequence:

>648_bases
ATGGATTTCACCCTCTGGGACATCGTGCGCAATCTGCTGATCGGCCTGCAATGGACCGTGGCCTTGTCGCTGGTGGCGTT
CATCGGCGGCGGGCTGATCGGCTTGCTGATCATGGGCATGCGCACCTCGGAAAAATCCGGCCCGCGCGTGACCGCCAAAC
TCTATATAGAACTGTTTCAGGGCACACCGCTGTTGATGCAGTTGTTTCTGGTGTTCTTCGGTGTCGCCCTGATGGGCCTG
AACATTTCGCCCTGGGCGGCGGCGGCACTGGCCTTGACGCTGTTTACCAGCGCCTACCTTGCGGAGATCTGGCGCGGCTG
TGTGGAGTCGATCTCCAAGGGCCAGTGGGAAGCATCCGCGAGCCTGGCGCTGACCCCGTTCGAGCAGATGCGCTATGTGA
TTCTGCCGCAGGCGCTGCGCATCGCGGTCGCGCCGACGGTCGGCTTTTCCGTGCAGGTGGTCAAAGGCACGGCGGTGACG
TCGATCATCGGCTTCACCGAATTGACCAAGACCGGCAGCATGCTGGCCAACGCCACGTTCGAACCTTTCATGGTCTATGG
CTTCGTTGCCCTGGGCTACTTCATCCTGTGCTACCCCTTGTCGCTGTGCGCGCGCCATCTGGAAAGGAGACTGCATGCCT
CTGCTTAG

Upstream 100 bases:

>100_bases
AAACCTACATCGTGACCACGCTGATCTACCTGGCCATGGCGCTGTTGATCCGGCAACTGCTGGCCTGGATCGGACGTCGC
TACATCTCGAGGAACCGCTG

Downstream 100 bases:

>100_bases
AATTTCCGCCCTGCATAAATACTATGGCGATCATCACGTGCTCAAAGGCATCGATCTATCGGTCGAAGAAGGCCAGGTCG
TGGCGATCATCGGTCGCAGC

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MDFTLWDIVRNLLIGLQWTVALSLVAFIGGGLIGLLIMGMRTSEKSGPRVTAKLYIELFQGTPLLMQLFLVFFGVALMGL
NISPWAAAALALTLFTSAYLAEIWRGCVESISKGQWEASASLALTPFEQMRYVILPQALRIAVAPTVGFSVQVVKGTAVT
SIIGFTELTKTGSMLANATFEPFMVYGFVALGYFILCYPLSLCARHLERRLHASA

Sequences:

>Translated_215_residues
MDFTLWDIVRNLLIGLQWTVALSLVAFIGGGLIGLLIMGMRTSEKSGPRVTAKLYIELFQGTPLLMQLFLVFFGVALMGL
NISPWAAAALALTLFTSAYLAEIWRGCVESISKGQWEASASLALTPFEQMRYVILPQALRIAVAPTVGFSVQVVKGTAVT
SIIGFTELTKTGSMLANATFEPFMVYGFVALGYFILCYPLSLCARHLERRLHASA
>Mature_215_residues
MDFTLWDIVRNLLIGLQWTVALSLVAFIGGGLIGLLIMGMRTSEKSGPRVTAKLYIELFQGTPLLMQLFLVFFGVALMGL
NISPWAAAALALTLFTSAYLAEIWRGCVESISKGQWEASASLALTPFEQMRYVILPQALRIAVAPTVGFSVQVVKGTAVT
SIIGFTELTKTGSMLANATFEPFMVYGFVALGYFILCYPLSLCARHLERRLHASA

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0765

COG function: function code E; ABC-type amino acid transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=206, Percent_Identity=37.378640776699, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=35.2380952380952, Blast_Score=114, Evalue=7e-27,
Organism=Escherichia coli, GI87082239, Length=207, Percent_Identity=32.8502415458937, Blast_Score=92, Evalue=2e-20,
Organism=Escherichia coli, GI1788645, Length=211, Percent_Identity=29.3838862559242, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI1786874, Length=211, Percent_Identity=27.9620853080569, Blast_Score=84, Evalue=8e-18,
Organism=Escherichia coli, GI1786873, Length=210, Percent_Identity=30, Blast_Score=82, Evalue=4e-17,
Organism=Escherichia coli, GI1787086, Length=216, Percent_Identity=26.3888888888889, Blast_Score=80, Evalue=2e-16,
Organism=Escherichia coli, GI1788646, Length=215, Percent_Identity=26.5116279069767, Blast_Score=73, Evalue=2e-14,
Organism=Escherichia coli, GI48994930, Length=196, Percent_Identity=31.1224489795918, Blast_Score=70, Evalue=2e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23450; Mature: 23450

Theoretical pI: Translated: 8.82; Mature: 8.82

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDFTLWDIVRNLLIGLQWTVALSLVAFIGGGLIGLLIMGMRTSEKSGPRVTAKLYIELFQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
GTPLLMQLFLVFFGVALMGLNISPWAAAALALTLFTSAYLAEIWRGCVESISKGQWEASA
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SLALTPFEQMRYVILPQALRIAVAPTVGFSVQVVKGTAVTSIIGFTELTKTGSMLANATF
CEEECCHHHHHHHHHHHHHHHEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCC
EPFMVYGFVALGYFILCYPLSLCARHLERRLHASA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDFTLWDIVRNLLIGLQWTVALSLVAFIGGGLIGLLIMGMRTSEKSGPRVTAKLYIELFQ
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
GTPLLMQLFLVFFGVALMGLNISPWAAAALALTLFTSAYLAEIWRGCVESISKGQWEASA
CCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
SLALTPFEQMRYVILPQALRIAVAPTVGFSVQVVKGTAVTSIIGFTELTKTGSMLANATF
CEEECCHHHHHHHHHHHHHHHEECCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCC
EPFMVYGFVALGYFILCYPLSLCARHLERRLHASA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]