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The map label for this gene is yohD [H]

Identifier: 66043561

GI number: 66043561

Start: 309519

End: 310181

Strand: Reverse

Name: yohD [H]

Synonym: Psyr_0291

Alternate gene names: 66043561

Gene position: 310181-309519 (Counterclockwise)

Preceding gene: 66043564

Following gene: 66043560

Centisome position: 5.09

GC content: 59.88

Gene sequence:

>663_bases
ATGCTCCAGAATTTCTTGAACGAATTCGGCTACTTCGCCCTGTTCCTCGGCACCTTTTTTGAAGGCGAGACCATTCTGGT
TCTTGCCGGATTTCTGGCGTTTCGCGGATACATGGACCTCAACATCGTCATCCTCGTAGCCTTTTTTGGCAGTTATGCGG
GTGACCAGTTGTGGTATTTCATGGGGCGCAAGCATGGCCGCAAGCTCCTGGCGCGCAAACCTCGCTGGCAACTCATGGGC
GACAAGGCGCTGCGGCTGGTCCGCAAGCACCCGGACATCTGGGTGTTGGGCTTCCGCTTCGTGTACGGCCTGCGAACGGT
CATGCCTGTGGCCATCGGCCTGTCGGGCTATCCCCCCGGGCGTTATCTCCTGCTGAACGGTATCGGCGCGGCTGTCTGGG
CCGCAGCGCTGGGTTCAGCTGCCTACCATTTCGGCGCGGTGCTCGAAGGCTTGCTGGGCAACGTCAAGAAATATGAACTC
TGGGTGCTGGGCGCACTGATACTGCTGGGGCTGGCCCTGTGGATACGCCGACGCATCAAGAACGCCCGTATCGCCCGTGA
AGAGCGTGAAGAAAGGAGCCGCTTCTGCGCATCGGCAGCGGCCTCCGACCTGGAGGAGCCGATCACCGTGCCCGTCGACC
TGACGAAAAAATCCGACGAATAA

Upstream 100 bases:

>100_bases
TTGTGGTTGCAAGAATCTTTAACGTCGAGACACATATGGACACTTTCATGATTGCCTTGGGCGCGTTAGGCTGCGCGTTC
ATTTCGCCAGCATCCAGACA

Downstream 100 bases:

>100_bases
ACGCTCAGTCCCCCTCCCGAGCGCAGGCTGACAGGCCTCGCTCGGCGACAGCGCGACCACCGCCCTCCCCATGCACCTTT
GCACAACCAGCAATGCCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 220; Mature: 220

Protein sequence:

>220_residues
MLQNFLNEFGYFALFLGTFFEGETILVLAGFLAFRGYMDLNIVILVAFFGSYAGDQLWYFMGRKHGRKLLARKPRWQLMG
DKALRLVRKHPDIWVLGFRFVYGLRTVMPVAIGLSGYPPGRYLLLNGIGAAVWAAALGSAAYHFGAVLEGLLGNVKKYEL
WVLGALILLGLALWIRRRIKNARIAREEREERSRFCASAAASDLEEPITVPVDLTKKSDE

Sequences:

>Translated_220_residues
MLQNFLNEFGYFALFLGTFFEGETILVLAGFLAFRGYMDLNIVILVAFFGSYAGDQLWYFMGRKHGRKLLARKPRWQLMG
DKALRLVRKHPDIWVLGFRFVYGLRTVMPVAIGLSGYPPGRYLLLNGIGAAVWAAALGSAAYHFGAVLEGLLGNVKKYEL
WVLGALILLGLALWIRRRIKNARIAREEREERSRFCASAAASDLEEPITVPVDLTKKSDE
>Mature_220_residues
MLQNFLNEFGYFALFLGTFFEGETILVLAGFLAFRGYMDLNIVILVAFFGSYAGDQLWYFMGRKHGRKLLARKPRWQLMG
DKALRLVRKHPDIWVLGFRFVYGLRTVMPVAIGLSGYPPGRYLLLNGIGAAVWAAALGSAAYHFGAVLEGLLGNVKKYEL
WVLGALILLGLALWIRRRIKNARIAREEREERSRFCASAAASDLEEPITVPVDLTKKSDE

Specific function: Unknown

COG id: COG0586

COG function: function code S; Uncharacterized membrane-associated protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the dedA family [H]

Homologues:

Organism=Escherichia coli, GI87082056, Length=157, Percent_Identity=36.9426751592357, Blast_Score=110, Evalue=9e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24793; Mature: 24793

Theoretical pI: Translated: 10.19; Mature: 10.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQNFLNEFGYFALFLGTFFEGETILVLAGFLAFRGYMDLNIVILVAFFGSYAGDQLWYF
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHH
MGRKHGRKLLARKPRWQLMGDKALRLVRKHPDIWVLGFRFVYGLRTVMPVAIGLSGYPPG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCC
RYLLLNGIGAAVWAAALGSAAYHFGAVLEGLLGNVKKYELWVLGALILLGLALWIRRRIK
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NARIAREEREERSRFCASAAASDLEEPITVPVDLTKKSDE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCC
>Mature Secondary Structure
MLQNFLNEFGYFALFLGTFFEGETILVLAGFLAFRGYMDLNIVILVAFFGSYAGDQLWYF
CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHH
MGRKHGRKLLARKPRWQLMGDKALRLVRKHPDIWVLGFRFVYGLRTVMPVAIGLSGYPPG
HHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHHHHHHHHCCCCCCCC
RYLLLNGIGAAVWAAALGSAAYHFGAVLEGLLGNVKKYELWVLGALILLGLALWIRRRIK
CEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
NARIAREEREERSRFCASAAASDLEEPITVPVDLTKKSDE
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]