Click here to switch to the map view.

The map label for this gene is rpoZ [H]

Identifier: 66043480

GI number: 66043480

Start: 225170

End: 225433

Strand: Reverse

Name: rpoZ [H]

Synonym: Psyr_0210

Alternate gene names: 66043480

Gene position: 225433-225170 (Counterclockwise)

Preceding gene: 66043481

Following gene: 66043479

Centisome position: 3.7

GC content: 54.55

Gene sequence:

>264_bases
ATGGCCCGCGTAACCGTTGAAGACTGCCTAGAACACGTGGATAACCGCTTTGAGCTGGTCATGCTCTCTACCAAGCGTGC
CCGTCAACTGGCAACCGGCGGCAAAGAACCAAAGCTGGCCTGGGAAAACGACAAGCCTACCGTTATGGCCCTGCGTGAAA
TCGCGGCTGGCGTAATGGATTACTCTGTAATCGCAGAAGCTGAAATCGTTGAAGATGAGCCATTGTTCGCAGCGTTCGAG
GACGAGTCCAACGAGGCCGTCTAA

Upstream 100 bases:

>100_bases
GTGGCATGCCGCTTGATGACTGGTGCTGTACGCTTGTAAACTACCGAGTCCGCTCGCCCATCCGGGCATCGCGCATCCGC
ATTTGCTACGAGGAATACCC

Downstream 100 bases:

>100_bases
GCCTATGCCAGGTCGACGTAGTACGGCGCAGGGTAAAAGCCATTGGCAAGGGGTAGCGCCTTGCCGAGCATAGACGCCCT
CGCCGACAGACTGTCGGCCT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 87; Mature: 86

Protein sequence:

>87_residues
MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGVMDYSVIAEAEIVEDEPLFAAFE
DESNEAV

Sequences:

>Translated_87_residues
MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGVMDYSVIAEAEIVEDEPLFAAFE
DESNEAV
>Mature_86_residues
ARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGVMDYSVIAEAEIVEDEPLFAAFED
ESNEAV

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

Organism=Escherichia coli, GI1790081, Length=64, Percent_Identity=51.5625, Blast_Score=77, Evalue=3e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 9712; Mature: 9581

Theoretical pI: Translated: 4.11; Mature: 4.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
4.6 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGVMD
CCCCCHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHH
YSVIAEAEIVEDEPLFAAFEDESNEAV
HHHHHHHEECCCCCCEEEECCCCCCCC
>Mature Secondary Structure 
ARVTVEDCLEHVDNRFELVMLSTKRARQLATGGKEPKLAWENDKPTVMALREIAAGVMD
CCCCHHHHHHHHCCCEEEEEECCHHHHHHHCCCCCCCEEECCCCCHHHHHHHHHHHHHH
YSVIAEAEIVEDEPLFAAFEDESNEAV
HHHHHHHEECCCCCCEEEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA