| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
Click here to switch to the map view.
The map label for this gene is gmk [H]
Identifier: 66043481
GI number: 66043481
Start: 225581
End: 226225
Strand: Reverse
Name: gmk [H]
Synonym: Psyr_0211
Alternate gene names: 66043481
Gene position: 226225-225581 (Counterclockwise)
Preceding gene: 66043482
Following gene: 66043480
Centisome position: 3.71
GC content: 60.31
Gene sequence:
>645_bases ATGACCCATATCACTGGCACCCTGTACATCATTTCCGCTCCGTCCGGCGCGGGCAAGACCAGTCTGGTCAAGGCGCTGAT GGACGCTCAGCAAGAGCCTCAGCACGGCGCGCAGGCAAAGATTCGCGTCTCTGTCTCGCACACCACGCGCGCCATGCGCC CCGGCGAAGTGGACGGTGTGAACTACAACTTCGTCGATCGTGCCACGTTCCTGAGCATGATCGAGCACGGCGACTTTCTC GAGCAGGCCGAGGTCTTCGGCAACCTGTATGGCACGTCGCAGAGCCACTTGCAGCAGACGCTGGACGAAGGCCACGACCT GATTCTGGAAATCGACTGGCAGGGTGCGCGCCAGGTTCGTGCGCAGATGCCGCAGGCCCGTTCCATCTTCATTTTGCCGC CGACCCAGCAGGCCTTGCGCCAGCGCCTGACCAATCGCGGCCAGGACAGTGACGAGATCATCGAAGCCCGCATGCGTGAA GCCGTCAGCGAAATGAGCCACTACAGCGAGTATGAGTACGTCGTGGTCAATGACGACTTTGCCGGCGCGCTGGAAGACCT CAAGGCGATTTTCCGCGCCAATCGCCTCACTCAACAGCATCAGCAAGAGCAATACAGCGAACTTTTTCAGGAGTTGCTGG CCTGA
Upstream 100 bases:
>100_bases GCCTTTGACCCACGCAGCACGCAGGCTGCCGTCAACCTCAAAGTGTTGATCGAGCAGATGCGTGAGCAAGTGCAGAATAT TGAGTAAGGCTAAACCTGAC
Downstream 100 bases:
>100_bases TCGAACCGTTTCCAGACATCAGGCAACAGGTTAAAAGCATGCCGTTGGTGGCATGCCGCTTGATGACTGGTGCTGTACGC TTGTAAACTACCGAGTCCGC
Product: guanylate kinase
Products: NA
Alternate protein names: GMP kinase [H]
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MTHITGTLYIISAPSGAGKTSLVKALMDAQQEPQHGAQAKIRVSVSHTTRAMRPGEVDGVNYNFVDRATFLSMIEHGDFL EQAEVFGNLYGTSQSHLQQTLDEGHDLILEIDWQGARQVRAQMPQARSIFILPPTQQALRQRLTNRGQDSDEIIEARMRE AVSEMSHYSEYEYVVVNDDFAGALEDLKAIFRANRLTQQHQQEQYSELFQELLA
Sequences:
>Translated_214_residues MTHITGTLYIISAPSGAGKTSLVKALMDAQQEPQHGAQAKIRVSVSHTTRAMRPGEVDGVNYNFVDRATFLSMIEHGDFL EQAEVFGNLYGTSQSHLQQTLDEGHDLILEIDWQGARQVRAQMPQARSIFILPPTQQALRQRLTNRGQDSDEIIEARMRE AVSEMSHYSEYEYVVVNDDFAGALEDLKAIFRANRLTQQHQQEQYSELFQELLA >Mature_213_residues THITGTLYIISAPSGAGKTSLVKALMDAQQEPQHGAQAKIRVSVSHTTRAMRPGEVDGVNYNFVDRATFLSMIEHGDFLE QAEVFGNLYGTSQSHLQQTLDEGHDLILEIDWQGARQVRAQMPQARSIFILPPTQQALRQRLTNRGQDSDEIIEARMREA VSEMSHYSEYEYVVVNDDFAGALEDLKAIFRANRLTQQHQQEQYSELFQELLA
Specific function: Essential for recycling GMP and indirectly, cGMP [H]
COG id: COG0194
COG function: function code F; Guanylate kinase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 guanylate kinase-like domain [H]
Homologues:
Organism=Homo sapiens, GI226874833, Length=182, Percent_Identity=36.8131868131868, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI4504221, Length=182, Percent_Identity=36.8131868131868, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI226874831, Length=182, Percent_Identity=36.8131868131868, Blast_Score=112, Evalue=3e-25, Organism=Homo sapiens, GI38570142, Length=183, Percent_Identity=32.2404371584699, Blast_Score=90, Evalue=1e-18, Organism=Homo sapiens, GI14780902, Length=190, Percent_Identity=28.4210526315789, Blast_Score=77, Evalue=1e-14, Organism=Homo sapiens, GI111154074, Length=162, Percent_Identity=29.0123456790123, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI21536464, Length=170, Percent_Identity=29.4117647058824, Blast_Score=69, Evalue=3e-12, Organism=Homo sapiens, GI21361598, Length=203, Percent_Identity=25.615763546798, Blast_Score=69, Evalue=3e-12, Organism=Escherichia coli, GI1790080, Length=209, Percent_Identity=56.9377990430622, Blast_Score=236, Evalue=7e-64, Organism=Caenorhabditis elegans, GI193203132, Length=187, Percent_Identity=32.620320855615, Blast_Score=104, Evalue=3e-23, Organism=Caenorhabditis elegans, GI17508835, Length=187, Percent_Identity=32.620320855615, Blast_Score=103, Evalue=5e-23, Organism=Saccharomyces cerevisiae, GI6320662, Length=191, Percent_Identity=39.7905759162304, Blast_Score=130, Evalue=1e-31, Organism=Drosophila melanogaster, GI21356141, Length=196, Percent_Identity=32.6530612244898, Blast_Score=100, Evalue=1e-21, Organism=Drosophila melanogaster, GI221330164, Length=133, Percent_Identity=33.0827067669173, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI221330166, Length=133, Percent_Identity=33.0827067669173, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI221330162, Length=133, Percent_Identity=33.0827067669173, Blast_Score=69, Evalue=3e-12, Organism=Drosophila melanogaster, GI24640542, Length=184, Percent_Identity=27.7173913043478, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI45554489, Length=184, Percent_Identity=27.7173913043478, Blast_Score=66, Evalue=2e-11, Organism=Drosophila melanogaster, GI85724806, Length=174, Percent_Identity=26.4367816091954, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI116007136, Length=184, Percent_Identity=27.7173913043478, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI45554481, Length=174, Percent_Identity=26.4367816091954, Blast_Score=65, Evalue=2e-11, Organism=Drosophila melanogaster, GI161077626, Length=184, Percent_Identity=27.7173913043478, Blast_Score=65, Evalue=2e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR008144 - InterPro: IPR008145 - InterPro: IPR020590 - InterPro: IPR017665 [H]
Pfam domain/function: PF00625 Guanylate_kin [H]
EC number: =2.7.4.8 [H]
Molecular weight: Translated: 24194; Mature: 24063
Theoretical pI: Translated: 4.94; Mature: 4.94
Prosite motif: PS00856 GUANYLATE_KINASE_1 ; PS50052 GUANYLATE_KINASE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.3 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 2.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHITGTLYIISAPSGAGKTSLVKALMDAQQEPQHGAQAKIRVSVSHTTRAMRPGEVDGV CCCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHCCCCCCCCCC NYNFVDRATFLSMIEHGDFLEQAEVFGNLYGTSQSHLQQTLDEGHDLILEIDWQGARQVR CCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCHHHHH AQMPQARSIFILPPTQQALRQRLTNRGQDSDEIIEARMREAVSEMSHYSEYEYVVVNDDF HHCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCH AGALEDLKAIFRANRLTQQHQQEQYSELFQELLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC >Mature Secondary Structure THITGTLYIISAPSGAGKTSLVKALMDAQQEPQHGAQAKIRVSVSHTTRAMRPGEVDGV CCEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEEECHHHHCCCCCCCCCC NYNFVDRATFLSMIEHGDFLEQAEVFGNLYGTSQSHLQQTLDEGHDLILEIDWQGARQVR CCCHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCEEEEEECCCCHHHHH AQMPQARSIFILPPTQQALRQRLTNRGQDSDEIIEARMREAVSEMSHYSEYEYVVVNDDF HHCCCCCEEEEECCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEECCCH AGALEDLKAIFRANRLTQQHQQEQYSELFQELLA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA