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The map label for this gene is rnk [H]

Identifier: 66043448

GI number: 66043448

Start: 193552

End: 193959

Strand: Reverse

Name: rnk [H]

Synonym: Psyr_0178

Alternate gene names: 66043448

Gene position: 193959-193552 (Counterclockwise)

Preceding gene: 66043449

Following gene: 66043440

Centisome position: 3.18

GC content: 60.54

Gene sequence:

>408_bases
ATGACCACAGCACCTTCGATCATCCTCACTCGGCTCGACGTACAGCGTCTTGAAAAGTTTATCGCCGACCAGAATGAAGA
CACACCTGGCATCCAGGCACTGCAGGCCGAACTGGACCGCGCCGACCAGGTGGTTGGCCACGATGAAGTGCCTGCGGGCG
TTGTGACCATGAATTCGCGCGTGCATTGCCGCGAAGAAGTCAGCGGCAAGGACTATCACCTCAAGCTGGTTTATCCACAG
GATGCGGGCGCAGACGGCACCGTCTCGGTCCTGGCACCAATGGGCTCGGCGCTGCTGGGCCTGCAAATCGGCCAACACAT
CGACTGGCCTGCACCGGGCGGCAAGACCCTGAAACTGACCTTGCTGGCGGTGGAGTATCAGCCGGAAGCGGCGGGCGAAT
ACGAGTAA

Upstream 100 bases:

>100_bases
TAGTGTCAGGCCTTGCCTCTGCAGACAAGAGGCTCGTCAAACCCCGCCAATTGGTGGGGTTTTGTTTTATTCATGGAGAA
TAAAGGAGTCTGCCCAGACC

Downstream 100 bases:

>100_bases
TCGAAGACGCCGCATCCGCAGAGCGCTTCCGCATTCAAGAGCGGACGCAGAGCGTCCGGAACTGCATTCCCACGCGGAGC
GTGAGGAACGATAGGCGCAC

Product: nucleoside diphosphate kinase regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MTTAPSIILTRLDVQRLEKFIADQNEDTPGIQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQ
DAGADGTVSVLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEYQPEAAGEYE

Sequences:

>Translated_135_residues
MTTAPSIILTRLDVQRLEKFIADQNEDTPGIQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQ
DAGADGTVSVLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEYQPEAAGEYE
>Mature_134_residues
TTAPSIILTRLDVQRLEKFIADQNEDTPGIQALQAELDRADQVVGHDEVPAGVVTMNSRVHCREEVSGKDYHLKLVYPQD
AGADGTVSVLAPMGSALLGLQIGQHIDWPAPGGKTLKLTLLAVEYQPEAAGEYE

Specific function: Rnk and sspA can functionally replace P.aeruginosa alginate regulatory gene algR2 [H]

COG id: COG0782

COG function: function code K; Transcription elongation factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786827, Length=134, Percent_Identity=44.7761194029851, Blast_Score=100, Evalue=6e-23,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001437 [H]

Pfam domain/function: PF01272 GreA_GreB [H]

EC number: NA

Molecular weight: Translated: 14562; Mature: 14430

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTAPSIILTRLDVQRLEKFIADQNEDTPGIQALQAELDRADQVVGHDEVPAGVVTMNSR
CCCCCCCEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
VHCREEVSGKDYHLKLVYPQDAGADGTVSVLAPMGSALLGLQIGQHIDWPAPGGKTLKLT
EEECCCCCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCEEEEE
LLAVEYQPEAAGEYE
EEEEEECCCCCCCCC
>Mature Secondary Structure 
TTAPSIILTRLDVQRLEKFIADQNEDTPGIQALQAELDRADQVVGHDEVPAGVVTMNSR
CCCCCCEEHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCC
VHCREEVSGKDYHLKLVYPQDAGADGTVSVLAPMGSALLGLQIGQHIDWPAPGGKTLKLT
EEECCCCCCCCEEEEEEECCCCCCCCEEEEECCCCHHHHHHHCCCCCCCCCCCCCEEEEE
LLAVEYQPEAAGEYE
EEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]