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The map label for this gene is hslR [H]

Identifier: 66043440

GI number: 66043440

Start: 185020

End: 185427

Strand: Reverse

Name: hslR [H]

Synonym: Psyr_0170

Alternate gene names: 66043440

Gene position: 185427-185020 (Counterclockwise)

Preceding gene: 66043448

Following gene: 66043439

Centisome position: 3.04

GC content: 62.01

Gene sequence:

>408_bases
ATGGCACAAAAGATGGAAGAAGACGATAAGGTCCGCCTGGATAAGTGGCTGTGGGCTGCGCGCTTTTTCAAAACACGTGC
GCTGGCCAAAGCGGCTATCGAAAGCGGCAAGGTGCACTGTCGCGGCGAGCGTTGCAAGCCCGGCAAGGAGCCGCGTGTCG
GTGACGAGTTCCAGATTCGCATGGGTTTCGACGACCGCACCGTAGTGGTCGAGGCGCTGTCGATCGTTCGGCGTGGCGCG
CCGGAGGCACAGACGCTGTATCACGAGACACCCGAGAGCATCGCCAGGCGCGAGAATGCCGCGGCTCAGCGCAAGGCCGG
CAACCTGGGTGTGACCACTGACGGAAAGCCGACCAAGAAGCAACGCCGGGAGCTTTTCGGCTTCCGCGCCAGCCAAAACA
ACGACTGA

Upstream 100 bases:

>100_bases
TACTTCATGTTCTTGATAGCGACAGATCAGCAACGGCAGGCCGTCACGTTTCCTCATTAGCCGGATAACGTTCAGACTGC
CATACGGATGAGGAATTCAA

Downstream 100 bases:

>100_bases
AACACAGCACCGGGCAGCTCCGGCTATCAGTCCGACGTGCCATCCAGCTTGGAAGCGCACCGCATAGCTCCTAAAATGCC
GGTCAATCCGCATGGCCCAC

Product: RNA-binding S4

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 135; Mature: 134

Protein sequence:

>135_residues
MAQKMEEDDKVRLDKWLWAARFFKTRALAKAAIESGKVHCRGERCKPGKEPRVGDEFQIRMGFDDRTVVVEALSIVRRGA
PEAQTLYHETPESIARRENAAAQRKAGNLGVTTDGKPTKKQRRELFGFRASQNND

Sequences:

>Translated_135_residues
MAQKMEEDDKVRLDKWLWAARFFKTRALAKAAIESGKVHCRGERCKPGKEPRVGDEFQIRMGFDDRTVVVEALSIVRRGA
PEAQTLYHETPESIARRENAAAQRKAGNLGVTTDGKPTKKQRRELFGFRASQNND
>Mature_134_residues
AQKMEEDDKVRLDKWLWAARFFKTRALAKAAIESGKVHCRGERCKPGKEPRVGDEFQIRMGFDDRTVVVEALSIVRRGAP
EAQTLYHETPESIARRENAAAQRKAGNLGVTTDGKPTKKQRRELFGFRASQNND

Specific function: Involved in the recycling of free 50S ribosomal subunits that still carry a nascent chain. Binds RNA more specifically than DNA. Binds with very high affinity to the free 50S ribosomal subunit. Does not bind it when it is part of the 70S ribosome [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=120, Percent_Identity=51.6666666666667, Blast_Score=118, Evalue=1e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 15331; Mature: 15199

Theoretical pI: Translated: 10.52; Mature: 10.52

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAQKMEEDDKVRLDKWLWAARFFKTRALAKAAIESGKVHCRGERCKPGKEPRVGDEFQIR
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEE
MGFDDRTVVVEALSIVRRGAPEAQTLYHETPESIARRENAAAQRKAGNLGVTTDGKPTKK
ECCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
QRRELFGFRASQNND
HHHHHHCCCCCCCCC
>Mature Secondary Structure 
AQKMEEDDKVRLDKWLWAARFFKTRALAKAAIESGKVHCRGERCKPGKEPRVGDEFQIR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCCCEEEE
MGFDDRTVVVEALSIVRRGAPEAQTLYHETPESIARRENAAAQRKAGNLGVTTDGKPTKK
ECCCCHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHH
QRRELFGFRASQNND
HHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]