Click here to switch to the map view.

The map label for this gene is exbD [H]

Identifier: 66043407

GI number: 66043407

Start: 145986

End: 146387

Strand: Direct

Name: exbD [H]

Synonym: Psyr_0137

Alternate gene names: 66043407

Gene position: 145986-146387 (Clockwise)

Preceding gene: 66043406

Following gene: 66043408

Centisome position: 2.4

GC content: 58.46

Gene sequence:

>402_bases
ATGTCTTTCTCCACTCAGGACAGCGATGAAGTGCTCAGCGAAATGAACGTCACGCCGCTGGTCGACGTGATGCTCGTGCT
GCTGGTGGTGTTCATCGTCACCACGCCGCTGATGACCAACGCGATCAAGGTCAACCTGCCCAAGACCGACGCGGTCGCTC
CCGCCGAGAAGAAAAACCCGGTGGTGGTCAGCGTCGATCAGGACGGCAAGTTCTACCTCGCCAAATCGGAAATCGCCCCG
GAGCTGCTGGAAAAAAGCCTGCAGGACGAAAAGGCCAAGGACCCGGAAATCCGCGTCCAGTTGCAGGCCGACACCGCCGT
GAATTATGGCCAGGTGGCCAAGGCCATGGCCTCCATCGAACGCTCCGGCATTACGAAGATATCCGTCATGACAGCGAAAT
GA

Upstream 100 bases:

>100_bases
TCGCCCACGACTTCGACGCCCTCGCCCAGCGCAGCGCCTTTGCCGTTACACGCCAGCCCATCGCCAGCAAGAATGGTCAT
GCCGTTCGGGAGGCCAGCTA

Downstream 100 bases:

>100_bases
CGCTCGACTGACCGGGTGGCTTCGCCTCGCGAAGCCGTCTGACCCGACCCCCGTGAATGCGGTTGTCCGTGGGCTGAAAA
GCCCCTGGAGGGGAGCGGCT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 132

Protein sequence:

>133_residues
MSFSTQDSDEVLSEMNVTPLVDVMLVLLVVFIVTTPLMTNAIKVNLPKTDAVAPAEKKNPVVVSVDQDGKFYLAKSEIAP
ELLEKSLQDEKAKDPEIRVQLQADTAVNYGQVAKAMASIERSGITKISVMTAK

Sequences:

>Translated_133_residues
MSFSTQDSDEVLSEMNVTPLVDVMLVLLVVFIVTTPLMTNAIKVNLPKTDAVAPAEKKNPVVVSVDQDGKFYLAKSEIAP
ELLEKSLQDEKAKDPEIRVQLQADTAVNYGQVAKAMASIERSGITKISVMTAK
>Mature_132_residues
SFSTQDSDEVLSEMNVTPLVDVMLVLLVVFIVTTPLMTNAIKVNLPKTDAVAPAEKKNPVVVSVDQDGKFYLAKSEIAPE
LLEKSLQDEKAKDPEIRVQLQADTAVNYGQVAKAMASIERSGITKISVMTAK

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=123, Percent_Identity=30.8943089430894, Blast_Score=73, Evalue=5e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 14451; Mature: 14320

Theoretical pI: Translated: 4.56; Mature: 4.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFSTQDSDEVLSEMNVTPLVDVMLVLLVVFIVTTPLMTNAIKVNLPKTDAVAPAEKKNP
CCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCC
VVVSVDQDGKFYLAKSEIAPELLEKSLQDEKAKDPEIRVQLQADTAVNYGQVAKAMASIE
EEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
RSGITKISVMTAK
HCCCEEEEEEECC
>Mature Secondary Structure 
SFSTQDSDEVLSEMNVTPLVDVMLVLLVVFIVTTPLMTNAIKVNLPKTDAVAPAEKKNP
CCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCC
VVVSVDQDGKFYLAKSEIAPELLEKSLQDEKAKDPEIRVQLQADTAVNYGQVAKAMASIE
EEEEECCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHH
RSGITKISVMTAK
HCCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10689178; 10984043 [H]