| Definition | Pseudomonas syringae pv. syringae B728a, complete genome. |
|---|---|
| Accession | NC_007005 |
| Length | 6,093,698 |
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The map label for this gene is cirA [H]
Identifier: 66043408
GI number: 66043408
Start: 146598
End: 149312
Strand: Direct
Name: cirA [H]
Synonym: Psyr_0138
Alternate gene names: 66043408
Gene position: 146598-149312 (Clockwise)
Preceding gene: 66043407
Following gene: 66043409
Centisome position: 2.41
GC content: 60.92
Gene sequence:
>2715_bases ATGAATCTTCCCGGTTGCACCCTCAAACCACTGGCCCTCGCGGTCCGGCGTCATCCACGTGCCCTGCTCTGCGCATTGGC CATGGGCATGAGCGGTGCCCAGGCGGCAGACGCCGTCGATGCGGATACCAGCGGCTCGGCCGTGTCCACCAGCGCAGCGG TTGTGCCTGCCACGACCCAGCTGCAACGTGTAGAAGTGACCGGTTCGGCGATCCGCCGGGTCGATGCCGAAACCGCCGTG CCGATTACCATCCTGCGCGCCGATGACCTGAAGAAACAGGGCGTGACCACCACCCAGGAAATGGTCCAGCGCATCACCGG CAGCCAGTCGATCAACAACAGCGCAGGCTCGGTCGGAGCCGGAACAGGAGGCGCCTCCTTCGCCGACATGCGCGGCATCG GTGCGAACAAGACGCTGGTGCTGCTCAACGGCCGACGTCTGGCCAACAATGCGTTGTCCGGTGTGGGTACGCCCAACGGC AGCGCCATTGACCTGAACATGATCCCGTTCGCTGCCATCGACCGCGTGGAAGTGCTGCGTGACGGTGCCTCGGCGCTGTA CGGCACCGACGCCATCGGCGGCGTGATTAACTTCATCACCAAGAAATCCCTGACTGACGGCAGCCTGACCCTCGGCGGCG AGACGCCGACCGCCAGTGGCGGCGGTGCGACCAATGACATGAGTGCCAGTTGGGGCTTCGGTGATCTGGAAGAAGACCGC TTTAACGTGATGGGCGTCTTCAACTACAACAAGCAGCAGAATCTGGACGCCAATGATCGTTCGTTTGCCAAGGATTACGT ACCGGGACGCGGTCTCAACCAGACCTCCGGGACGGCATATCCCGGCAATTATTTTCAGGGCGACAATTCGGCAAACCCGC TGGGCAGAAACTGCAGCGGTCCTAACCTGATCGCCAGCAACGGCATCTGCCGGTTCAGCACTCGCGAATACATCGACCTG ATCCCGCAAACCGAAAAGACCTCTTTTTTCGGCAAGGCCACCGGCAAGCTGGCCGACGATCACAACGTCAGCCTCGAATA CTTCTGGGCCCGCAACAACAACCATACCGATATCGGGCCAGCGCCTCTCACCGGGCTGTCACTGGACTCGTCGTCACCCT TCTATCCCGGTAACGGTATCACTCCGGCCCCCACCGATTTCACCCTCGACCCGACGCAACCGGTCAGCACCGCCTGGCGA GAAACGGCAGCAGGCCCACGCGGATCAAGCGACCAAAATACCAGTCAGCGCTTTCTGCTGAATTTCGACGGTCTGGTGGG TGGCTGGGACTACAACGTTGGCGCGTCTTACAACCAGAACAAAGTGTTGTCATCACTCACCGATGGTTATATCAGCGATG CTGCAATGCTTAATGGTCTCGCCAACGGCACTCTCAATCCGTTTGGTCCGCAGACCGCTGCCGGTCAGGCGCTGATTGAC GCCAATCAATACCATGGCCAGTACTCAAGCGCTGTGGGCCGGGTGGCCGGGCTGGATGCGCGCATCAGCCGGGAAATCGG TGACTGGTTCGGTGCAGGCCCTGCCGGCATTGCGCTAGGTGGCGAATACCGAAAAGAGAAAATGCATCAGGAGTACGAAG CGTTCGTCAACGACGTCAGCAGTCTGGGCGCAGATGCCGCAGGCAGCGTCGAAGGCGACAGGAGCGTCAAGGCGGAATAC GCCGAACTGAATGTCCCCGTGCTGGACAGCCTTGAACTGACCGCCGCCGTTCGTCACGACAAATACAGCGACTTCGGCAG CACCACCAACCCGAAATACTCGTTCCGCTACCAGCCGTTCAAGCAACTGGTGGTCCGTGGTGCCTACAGCGAAGGCTTTC GAGCACCTTCGCTGTACGAACTGTACGCCCCGCGTAGCACGACCTTTACCCAAGGCTATTACAACGACCCGGTGCTGTGT GCCGGTGGTGTCGTCCAGCCTGGTGGTAACGCCGGTCGTGATTGCCAGCAGCAGTTCCTCAACAATGGCGGAGGCAACAC CGAGCTGGCCCCGGAAAAAGCCCGCAACATGACCCTGGGCTTCGTCTATCAGCCGGTCAACAACCTGTCGATGGGCCTGG ATTTCTGGTGGATTCACATTTCCAACCAGATCCAGGCGTTCCCCGAGTCGACCGTGTTCGATGACCCGAATACCTACGCC GACCGCTACGTGCGCGCCGCCGACGGTTCGATCGCCAACATCGTGACCGGCAACGCCAACCTGGGCATCGTCAAGACCAG CGGTGTCGACGTAACCCTCGACTATCGCTTTCCGAACACGCCTTACGGCCAGTTCGGTCTGGGCATGACCGGCACCTACG TCACCCGCTACGACTTCCAGAACATCATCGACGGCCCATACACCGACAAGGTCGGCGACTTCCAGGGCGACGGGGTGATT TCGCGCTGGAAACACGTGCTGACCGGTACCTGGGCACTGGGCGATACCCGCGCCTCCATCACCAACCGCTTCACCAGCGG CTACAACGACTACGACCGCACCACCAATGCGCGGGTCGCGTCGTATGCGCTGTGGGACATGTCGGTGGGTCATACCTTTG ACAAGGTGCTGGATATCGATGCCGGAGTGCGCAATATGTTCGACCGCAACCCGCCGTTCTCCAACCAGGCCTACAACTTC CAGTCCGGCTACGACCCTCGTTACGCCGACCCGCTGGGCCGCACCCTGTTCGCCCGCGCGACTTACCACTTCTGA
Upstream 100 bases:
>100_bases AGAAGAAGTGGAACTCCCGCTCGGCACAACCGCGTCGGGAACAGAGGGCTCACAAGGCCATTTCAATAATGTCTGGATCA AGTCGGAACTAACCATGCTG
Downstream 100 bases:
>100_bases GTGTGACGACGTGGCCCATACACGCTCCGTGGGCCACGTCAGATTGCGAGCTCGCCCCCTCCGGCCCAGGTTTCATCCGC CTTCCCCGGCCGGGGGCTTT
Product: TonB-dependent receptor:TonB-dependent receptor
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 904; Mature: 904
Protein sequence:
>904_residues MNLPGCTLKPLALAVRRHPRALLCALAMGMSGAQAADAVDADTSGSAVSTSAAVVPATTQLQRVEVTGSAIRRVDAETAV PITILRADDLKKQGVTTTQEMVQRITGSQSINNSAGSVGAGTGGASFADMRGIGANKTLVLLNGRRLANNALSGVGTPNG SAIDLNMIPFAAIDRVEVLRDGASALYGTDAIGGVINFITKKSLTDGSLTLGGETPTASGGGATNDMSASWGFGDLEEDR FNVMGVFNYNKQQNLDANDRSFAKDYVPGRGLNQTSGTAYPGNYFQGDNSANPLGRNCSGPNLIASNGICRFSTREYIDL IPQTEKTSFFGKATGKLADDHNVSLEYFWARNNNHTDIGPAPLTGLSLDSSSPFYPGNGITPAPTDFTLDPTQPVSTAWR ETAAGPRGSSDQNTSQRFLLNFDGLVGGWDYNVGASYNQNKVLSSLTDGYISDAAMLNGLANGTLNPFGPQTAAGQALID ANQYHGQYSSAVGRVAGLDARISREIGDWFGAGPAGIALGGEYRKEKMHQEYEAFVNDVSSLGADAAGSVEGDRSVKAEY AELNVPVLDSLELTAAVRHDKYSDFGSTTNPKYSFRYQPFKQLVVRGAYSEGFRAPSLYELYAPRSTTFTQGYYNDPVLC AGGVVQPGGNAGRDCQQQFLNNGGGNTELAPEKARNMTLGFVYQPVNNLSMGLDFWWIHISNQIQAFPESTVFDDPNTYA DRYVRAADGSIANIVTGNANLGIVKTSGVDVTLDYRFPNTPYGQFGLGMTGTYVTRYDFQNIIDGPYTDKVGDFQGDGVI SRWKHVLTGTWALGDTRASITNRFTSGYNDYDRTTNARVASYALWDMSVGHTFDKVLDIDAGVRNMFDRNPPFSNQAYNF QSGYDPRYADPLGRTLFARATYHF
Sequences:
>Translated_904_residues MNLPGCTLKPLALAVRRHPRALLCALAMGMSGAQAADAVDADTSGSAVSTSAAVVPATTQLQRVEVTGSAIRRVDAETAV PITILRADDLKKQGVTTTQEMVQRITGSQSINNSAGSVGAGTGGASFADMRGIGANKTLVLLNGRRLANNALSGVGTPNG SAIDLNMIPFAAIDRVEVLRDGASALYGTDAIGGVINFITKKSLTDGSLTLGGETPTASGGGATNDMSASWGFGDLEEDR FNVMGVFNYNKQQNLDANDRSFAKDYVPGRGLNQTSGTAYPGNYFQGDNSANPLGRNCSGPNLIASNGICRFSTREYIDL IPQTEKTSFFGKATGKLADDHNVSLEYFWARNNNHTDIGPAPLTGLSLDSSSPFYPGNGITPAPTDFTLDPTQPVSTAWR ETAAGPRGSSDQNTSQRFLLNFDGLVGGWDYNVGASYNQNKVLSSLTDGYISDAAMLNGLANGTLNPFGPQTAAGQALID ANQYHGQYSSAVGRVAGLDARISREIGDWFGAGPAGIALGGEYRKEKMHQEYEAFVNDVSSLGADAAGSVEGDRSVKAEY AELNVPVLDSLELTAAVRHDKYSDFGSTTNPKYSFRYQPFKQLVVRGAYSEGFRAPSLYELYAPRSTTFTQGYYNDPVLC AGGVVQPGGNAGRDCQQQFLNNGGGNTELAPEKARNMTLGFVYQPVNNLSMGLDFWWIHISNQIQAFPESTVFDDPNTYA DRYVRAADGSIANIVTGNANLGIVKTSGVDVTLDYRFPNTPYGQFGLGMTGTYVTRYDFQNIIDGPYTDKVGDFQGDGVI SRWKHVLTGTWALGDTRASITNRFTSGYNDYDRTTNARVASYALWDMSVGHTFDKVLDIDAGVRNMFDRNPPFSNQAYNF QSGYDPRYADPLGRTLFARATYHF >Mature_904_residues MNLPGCTLKPLALAVRRHPRALLCALAMGMSGAQAADAVDADTSGSAVSTSAAVVPATTQLQRVEVTGSAIRRVDAETAV PITILRADDLKKQGVTTTQEMVQRITGSQSINNSAGSVGAGTGGASFADMRGIGANKTLVLLNGRRLANNALSGVGTPNG SAIDLNMIPFAAIDRVEVLRDGASALYGTDAIGGVINFITKKSLTDGSLTLGGETPTASGGGATNDMSASWGFGDLEEDR FNVMGVFNYNKQQNLDANDRSFAKDYVPGRGLNQTSGTAYPGNYFQGDNSANPLGRNCSGPNLIASNGICRFSTREYIDL IPQTEKTSFFGKATGKLADDHNVSLEYFWARNNNHTDIGPAPLTGLSLDSSSPFYPGNGITPAPTDFTLDPTQPVSTAWR ETAAGPRGSSDQNTSQRFLLNFDGLVGGWDYNVGASYNQNKVLSSLTDGYISDAAMLNGLANGTLNPFGPQTAAGQALID ANQYHGQYSSAVGRVAGLDARISREIGDWFGAGPAGIALGGEYRKEKMHQEYEAFVNDVSSLGADAAGSVEGDRSVKAEY AELNVPVLDSLELTAAVRHDKYSDFGSTTNPKYSFRYQPFKQLVVRGAYSEGFRAPSLYELYAPRSTTFTQGYYNDPVLC AGGVVQPGGNAGRDCQQQFLNNGGGNTELAPEKARNMTLGFVYQPVNNLSMGLDFWWIHISNQIQAFPESTVFDDPNTYA DRYVRAADGSIANIVTGNANLGIVKTSGVDVTLDYRFPNTPYGQFGLGMTGTYVTRYDFQNIIDGPYTDKVGDFQGDGVI SRWKHVLTGTWALGDTRASITNRFTSGYNDYDRTTNARVASYALWDMSVGHTFDKVLDIDAGVRNMFDRNPPFSNQAYNF QSGYDPRYADPLGRTLFARATYHF
Specific function: Not yet known. Postulated to participate in iron transport. Outer membrane receptor for colicins IA and IB [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell outer membrane [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the tonB-dependent receptor family [H]
Homologues:
Organism=Escherichia coli, GI1788478, Length=157, Percent_Identity=31.2101910828025, Blast_Score=84, Evalue=4e-17, Organism=Escherichia coli, GI1790405, Length=137, Percent_Identity=35.036496350365, Blast_Score=72, Evalue=1e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012910 - InterPro: IPR000531 - InterPro: IPR010916 - InterPro: IPR010917 [H]
Pfam domain/function: PF07715 Plug; PF00593 TonB_dep_Rec [H]
EC number: NA
Molecular weight: Translated: 96866; Mature: 96866
Theoretical pI: Translated: 5.01; Mature: 5.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.7 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNLPGCTLKPLALAVRRHPRALLCALAMGMSGAQAADAVDADTSGSAVSTSAAVVPATTQ CCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHCCCCCCCCCCEEECCCEEECCCCC LQRVEVTGSAIRRVDAETAVPITILRADDLKKQGVTTTQEMVQRITGSQSINNSAGSVGA EEEEEECHHHHHHCCCCCCCCEEEEECCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCC GTGGASFADMRGIGANKTLVLLNGRRLANNALSGVGTPNGSAIDLNMIPFAAIDRVEVLR CCCCCCHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHH DGASALYGTDAIGGVINFITKKSLTDGSLTLGGETPTASGGGATNDMSASWGFGDLEEDR CCCHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC FNVMGVFNYNKQQNLDANDRSFAKDYVPGRGLNQTSGTAYPGNYFQGDNSANPLGRNCSG EEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PNLIASNGICRFSTREYIDLIPQTEKTSFFGKATGKLADDHNVSLEYFWARNNNHTDIGP CCEEECCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC APLTGLSLDSSSPFYPGNGITPAPTDFTLDPTQPVSTAWRETAAGPRGSSDQNTSQRFLL CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEE NFDGLVGGWDYNVGASYNQNKVLSSLTDGYISDAAMLNGLANGTLNPFGPQTAAGQALID EECCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE ANQYHGQYSSAVGRVAGLDARISREIGDWFGAGPAGIALGGEYRKEKMHQEYEAFVNDVS CHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH SLGADAAGSVEGDRSVKAEYAELNVPVLDSLELTAAVRHDKYSDFGSTTNPKYSFRYQPF HHCCCCCCCCCCCCCHHEEHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECHH KQLVVRGAYSEGFRAPSLYELYAPRSTTFTQGYYNDPVLCAGGVVQPGGNAGRDCQQQFL HHHHHHCCHHCCCCCCCEEEEECCCCCEEECCCCCCCEEEECCEECCCCCCCHHHHHHHH NNGGGNTELAPEKARNMTLGFVYQPVNNLSMGLDFWWIHISNQIQAFPESTVFDDPNTYA HCCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCHHCCCCCCCCCCCCHHH DRYVRAADGSIANIVTGNANLGIVKTSGVDVTLDYRFPNTPYGQFGLGMTGTYVTRYDFQ HHEEECCCCCEEEEEECCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEECHH NIIDGPYTDKVGDFQGDGVISRWKHVLTGTWALGDTRASITNRFTSGYNDYDRTTNARVA HHCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEE SYALWDMSVGHTFDKVLDIDAGVRNMFDRNPPFSNQAYNFQSGYDPRYADPLGRTLFARA EEEEECCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHE TYHF ECCC >Mature Secondary Structure MNLPGCTLKPLALAVRRHPRALLCALAMGMSGAQAADAVDADTSGSAVSTSAAVVPATTQ CCCCCCCHHHHHHHHHHCCHHHHHHHHHCCCCCCHHCCCCCCCCCCEEECCCEEECCCCC LQRVEVTGSAIRRVDAETAVPITILRADDLKKQGVTTTQEMVQRITGSQSINNSAGSVGA EEEEEECHHHHHHCCCCCCCCEEEEECCCHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCC GTGGASFADMRGIGANKTLVLLNGRRLANNALSGVGTPNGSAIDLNMIPFAAIDRVEVLR CCCCCCHHHHCCCCCCCEEEEECCCHHHHHHHCCCCCCCCCEEEEECCCHHHHHHHHHHH DGASALYGTDAIGGVINFITKKSLTDGSLTLGGETPTASGGGATNDMSASWGFGDLEEDR CCCHHHHCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCC FNVMGVFNYNKQQNLDANDRSFAKDYVPGRGLNQTSGTAYPGNYFQGDNSANPLGRNCSG EEEEEEEECCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC PNLIASNGICRFSTREYIDLIPQTEKTSFFGKATGKLADDHNVSLEYFWARNNNHTDIGP CCEEECCCEEEECCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCC APLTGLSLDSSSPFYPGNGITPAPTDFTLDPTQPVSTAWRETAAGPRGSSDQNTSQRFLL CCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCEEEE NFDGLVGGWDYNVGASYNQNKVLSSLTDGYISDAAMLNGLANGTLNPFGPQTAAGQALID EECCEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEE ANQYHGQYSSAVGRVAGLDARISREIGDWFGAGPAGIALGGEYRKEKMHQEYEAFVNDVS CHHHCCHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCEEECCHHHHHHHHHHHHHHHHHHH SLGADAAGSVEGDRSVKAEYAELNVPVLDSLELTAAVRHDKYSDFGSTTNPKYSFRYQPF HHCCCCCCCCCCCCCHHEEHHHCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCEEEEECHH KQLVVRGAYSEGFRAPSLYELYAPRSTTFTQGYYNDPVLCAGGVVQPGGNAGRDCQQQFL HHHHHHCCHHCCCCCCCEEEEECCCCCEEECCCCCCCEEEECCEECCCCCCCHHHHHHHH NNGGGNTELAPEKARNMTLGFVYQPVNNLSMGLDFWWIHISNQIQAFPESTVFDDPNTYA HCCCCCCCCCCHHHCCCEEEEEECCCCCCCCCCEEEEEEECCCHHCCCCCCCCCCCCHHH DRYVRAADGSIANIVTGNANLGIVKTSGVDVTLDYRFPNTPYGQFGLGMTGTYVTRYDFQ HHEEECCCCCEEEEEECCCCEEEEEECCEEEEEEECCCCCCCCCCCCCCCCCEEEEECHH NIIDGPYTDKVGDFQGDGVISRWKHVLTGTWALGDTRASITNRFTSGYNDYDRTTNARVA HHCCCCCCCCCCCCCCCCHHHHHHHHHEEEEECCCCHHHHHHHHHCCCCCCCCCCCCEEE SYALWDMSVGHTFDKVLDIDAGVRNMFDRNPPFSNQAYNFQSGYDPRYADPLGRTLFARA EEEEECCCCCCHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHE TYHF ECCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2644220; 9278503; 3316180; 1315732; 2160948 [H]