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The map label for this gene is yedQ [H]

Identifier: 66043359

GI number: 66043359

Start: 95185

End: 96192

Strand: Direct

Name: yedQ [H]

Synonym: Psyr_0088

Alternate gene names: 66043359

Gene position: 95185-96192 (Clockwise)

Preceding gene: 66043358

Following gene: 66043365

Centisome position: 1.56

GC content: 61.01

Gene sequence:

>1008_bases
ATGGTTCTTATGGAAAAGCAGCCTCCCACCTCCCTACCCGGCACACCGATCACTGATATGCCCGCAGCCGCAGAAACCCT
GTTAGCCCTGATGCACGCTCAGGCAGAAGTCGCACGCCTGAGCGAGCGTGAACAATTGTTCAGCTCGTTGCTGGTGAGTG
TGAACGCTGTTTTGTGGGCGTTCGACTGGGAAACCCAGCACATGATCTATGTCAGCCCGGCCTACGAGCGCATCTTCGGT
CGTTCGGCGGGCCTGCTGCTGGCTGACTACAGTGAGTGGCGCGACAGCATCTACCCCGATGACCTGAACTACGCCGAGCG
CAGCCTCAACGAGGTCATCGAGAAAGGCTCGATCGAGGATCGCGAGTACCGGATCATTCGTGCGGACGGCGAAGTGCGCT
GGCTCAGCGACAAATGCTTCGTCAGCCATCGCGCCGACGCCAGCCAGCGTCTGATCGTGGTGGGCATCGCCGAAGACATC
ACCGAGAAGAAGCAGCTCGAGAATGAGCTGCAACGCCTGGCGACCACCGATGTGCTGACCCAGAGCAGCAACCGCCGGCA
CTTTTTCGAATGCGCCCAGCGCGAGTTCGAACTGGCTCGCCTCAATGGCACGCCGCTGGCGTTTCTGCTGCTGGATATCG
ATGACTTCAAGCTGGTGAACGACACCTACGGCCATCAGGAAGGCGATACCGTGCTGCAACGCATCGCCGAAAGCGGTCGT
TCGGCATTGAGGCGGGGTGACTTGTTCGGGCGTATCGGTGGCGAAGAGTTCGCTGCGGTATTCCCCGGCTGTGCGCCGGA
CATGGCGATGCAGATCGCCGAGCGCCTGCAACGCGAGATCCAGCGTCAGAACTTCCAGTCCGCTGGCACCACCTTCAGCA
TCACTGCCAGTCAGGGCCTGACCAATCTGGGCCCGGACGACCCAAGCCTCGAAACCCTCTACGGCCGCGCCGACGCCGCG
ATGTACCAAGCCAAACGCCAGGGCAAGAATCAGATCGTGCTGGTCTGA

Upstream 100 bases:

>100_bases
CCCTTGGCGCGCCGGTCCCGGAACTTATCCCCTCTCCCTCTATCTCATCAACTTTCCCGCCAATCGGGACAGGGCGCCTC
ACTGGCCGTAACCGCTTGAG

Downstream 100 bases:

>100_bases
AATGCTTTCCCGAATGTAGAAAGCACGACTGGCCCCTTCGCGAACAAGGCGGATCCCACGGGTGTACGCGGTACCTTGTG
GGAGCGAGCTTGCTCGCGAA

Product: PAS:GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 335; Mature: 335

Protein sequence:

>335_residues
MVLMEKQPPTSLPGTPITDMPAAAETLLALMHAQAEVARLSEREQLFSSLLVSVNAVLWAFDWETQHMIYVSPAYERIFG
RSAGLLLADYSEWRDSIYPDDLNYAERSLNEVIEKGSIEDREYRIIRADGEVRWLSDKCFVSHRADASQRLIVVGIAEDI
TEKKQLENELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGR
SALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERLQREIQRQNFQSAGTTFSITASQGLTNLGPDDPSLETLYGRADAA
MYQAKRQGKNQIVLV

Sequences:

>Translated_335_residues
MVLMEKQPPTSLPGTPITDMPAAAETLLALMHAQAEVARLSEREQLFSSLLVSVNAVLWAFDWETQHMIYVSPAYERIFG
RSAGLLLADYSEWRDSIYPDDLNYAERSLNEVIEKGSIEDREYRIIRADGEVRWLSDKCFVSHRADASQRLIVVGIAEDI
TEKKQLENELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGR
SALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERLQREIQRQNFQSAGTTFSITASQGLTNLGPDDPSLETLYGRADAA
MYQAKRQGKNQIVLV
>Mature_335_residues
MVLMEKQPPTSLPGTPITDMPAAAETLLALMHAQAEVARLSEREQLFSSLLVSVNAVLWAFDWETQHMIYVSPAYERIFG
RSAGLLLADYSEWRDSIYPDDLNYAERSLNEVIEKGSIEDREYRIIRADGEVRWLSDKCFVSHRADASQRLIVVGIAEDI
TEKKQLENELQRLATTDVLTQSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGR
SALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERLQREIQRQNFQSAGTTFSITASQGLTNLGPDDPSLETLYGRADAA
MYQAKRQGKNQIVLV

Specific function: Involves in the regulation of cellulose production [H]

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 GGDEF domain [H]

Homologues:

Organism=Escherichia coli, GI145693134, Length=183, Percent_Identity=32.7868852459016, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI87081881, Length=182, Percent_Identity=33.5164835164835, Blast_Score=105, Evalue=4e-24,
Organism=Escherichia coli, GI87082007, Length=169, Percent_Identity=36.094674556213, Blast_Score=104, Evalue=8e-24,
Organism=Escherichia coli, GI1788381, Length=183, Percent_Identity=31.1475409836066, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1787262, Length=171, Percent_Identity=33.9181286549708, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1786584, Length=171, Percent_Identity=29.8245614035088, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787816, Length=164, Percent_Identity=34.7560975609756, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI87081977, Length=154, Percent_Identity=31.8181818181818, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788085, Length=208, Percent_Identity=28.8461538461538, Blast_Score=84, Evalue=2e-17,
Organism=Escherichia coli, GI1787802, Length=197, Percent_Identity=28.9340101522843, Blast_Score=81, Evalue=8e-17,
Organism=Escherichia coli, GI87081974, Length=167, Percent_Identity=29.940119760479, Blast_Score=79, Evalue=6e-16,
Organism=Escherichia coli, GI1787541, Length=232, Percent_Identity=28.8793103448276, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1787056, Length=178, Percent_Identity=28.0898876404494, Blast_Score=66, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160 [H]

Pfam domain/function: PF00990 GGDEF [H]

EC number: NA

Molecular weight: Translated: 37697; Mature: 37697

Theoretical pI: Translated: 4.62; Mature: 4.62

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVLMEKQPPTSLPGTPITDMPAAAETLLALMHAQAEVARLSEREQLFSSLLVSVNAVLWA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
FDWETQHMIYVSPAYERIFGRSAGLLLADYSEWRDSIYPDDLNYAERSLNEVIEKGSIED
EECCCCEEEEECHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
REYRIIRADGEVRWLSDKCFVSHRADASQRLIVVGIAEDITEKKQLENELQRLATTDVLT
CEEEEEEECCCEEEECCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
QSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGR
CCCCCHHHHHHHHHHHHHEEECCCCEEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHH
SALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERLQREIQRQNFQSAGTTFSITASQGL
HHHHHCCHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
TNLGPDDPSLETLYGRADAAMYQAKRQGKNQIVLV
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEC
>Mature Secondary Structure
MVLMEKQPPTSLPGTPITDMPAAAETLLALMHAQAEVARLSEREQLFSSLLVSVNAVLWA
CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEE
FDWETQHMIYVSPAYERIFGRSAGLLLADYSEWRDSIYPDDLNYAERSLNEVIEKGSIED
EECCCCEEEEECHHHHHHHCCCCCEEEEEHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCC
REYRIIRADGEVRWLSDKCFVSHRADASQRLIVVGIAEDITEKKQLENELQRLATTDVLT
CEEEEEEECCCEEEECCHHHHHCCCCCCCCEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
QSSNRRHFFECAQREFELARLNGTPLAFLLLDIDDFKLVNDTYGHQEGDTVLQRIAESGR
CCCCCHHHHHHHHHHHHHEEECCCCEEEEEEECCCCEEECCCCCCCCHHHHHHHHHHHHH
SALRRGDLFGRIGGEEFAAVFPGCAPDMAMQIAERLQREIQRQNFQSAGTTFSITASQGL
HHHHHCCHHCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCC
TNLGPDDPSLETLYGRADAAMYQAKRQGKNQIVLV
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA