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The map label for this gene is yciR [C]

Identifier: 66043357

GI number: 66043357

Start: 91808

End: 93727

Strand: Reverse

Name: yciR [C]

Synonym: Psyr_0086

Alternate gene names: 66043357

Gene position: 93727-91808 (Counterclockwise)

Preceding gene: 66043360

Following gene: 66043356

Centisome position: 1.54

GC content: 60.68

Gene sequence:

>1920_bases
ATGTCCGATTATTCCCGTAACGCGCTGCGAACCGCCGTTCTGTATGGGCTACTGTCGATTCTGTGGTTCGCGACAGGCAG
CGCCCTGCTGTCTTTTTTCGTCAAGGATCCGGCTCGACTGGCCGTCGGACAACAGATGATCGGTTACGGCTGGGCGTTGC
TCAGTACCGTCATGATCTTTATTGCACGTGACAGATTGAAGGCCATCGTCGGCGGCGAAGCGCTGTTCGAGCGTCAACAG
CAGGACTATGACCGGCTGCTGCTGGCGGCGGTGGTGTTCGACAGCACGCGTGAGGGCGTACTGGTCAGTGATGCCGAAGG
GCGCATTGTCCATGTAAATCGTGCGTTTGTGGACATCACCGGCTATCAGGCCGACGAGGTGCTGGGCTTCAACCCCAGCA
AGTTCAAGTCCGGTCGTCATGGCCCCGAGTTTTATCGGCAGATGTACCACTCGCTGCAGAGTGCCGGGCAGTGGAGCGGC
GAGATCTGGAACCGACGCAAAAGCGGCGAGATCTATCCGCAGTGGCAAACCATCCGCAGCATCAAGGGTGAGGACGGGCA
GCCCAGGCATTTTGTCGCGGTGTTTTCCGACATCACGGCCATCAAGCGCTCCGAGCAGGAGTTGGCGCAACTGGCCCATT
ACGATGCGCTGACCGAGTTGCCCAATCGTCTGCTGCTGACCGACCGGATCAGCCAGGCGCTGACCTCGGCGCGCTCCAGC
AGGCGCGGCTGTGCGCTGCTGGTGGTCGACCTGGACAACTTCAGAAACATCAACGACAGCCTTGGCCATAACATCGGCGA
CGAAGTGCTCAAGGCGGCTGCCGAACGTCTCAATGCGCTGGCCGACAGCGGCATGACGGTCTCGCGGCTGGGCGGTGACG
AATTCGCGCTGCTGGTCAAAAACTGTACACACATGGTGCATGCCGCAGCGCTCGCGCAGCAGGTGATCAATGCCTTCAAA
GCGCCGTACCCCATTGCCGGGCACCAGCTGTTCGTCACTGCCAGTATCGGTATCAGCCTGTTTCCCGGTGATGCGCTGAC
TGCCGAGCAGTTGTTGCGCAATGCCGATTCGGCGCTGTTCAAGGCCAAGACCGATGGCCGCGAAGGGTTTGCGCTGTACA
CCGAAGAGCTGACCGCCCAAGCCCAGCAACGCGTGCAACTGGCCAGCGAGTTGCGTCAGGCGATCGAGCAGGACGAGTTG
CGGGTCTTCTACCAACCGGTTTACGACCTGGTGACCGGGCGTATCTGCGCGGTCGAAGCGCTGGTGCGCTGGCAACATCC
GACCCGTGGCATGGTGTCACCTGGCGATTTCATCCCGATTGCCGAGCAGAACGGGCTCATCGCCGATATCGATGCCTGGG
TATTGAACACCGCCTGTCGGCAGATGCAGGCCTGGCTGGCAGAAGGCGTCTCGATTGCGTCCGTCGCGGTCAATGTGTCC
AGCCGTCTGTTCAGTCGTGGTGATGTCGATCGGCAAGTGGCTGAGGTCTTGAACGAGACCGGCCTTGATCCGGCATTTCT
TGAGCTGGAAGTCACCGAAAGTGCCGTCATGGAGGACCCTGAACAGGCCATCGAGCAACTGCATCGTCTGCGTGAACTGG
GCCTGAGCCTGGCTATCGATGATTTCGGCACAGGCTACTCATCGCTGCTGCGGCTCAAGAGCATGCCGGTGCAGAAGCTC
AAGATCGACCAGGGTTTCGTGGCCGGACTGCCGGGCGATGTGGATGACATCGCGATCGTCCGGGCGGTCATCGCGCTGGC
TTCGAGCCTGGGCATGCGTGTACTGGCCGAGGGGATCGAGCACGCCAATCAGGCTTCATTTCTGTTAAGCAACGGTTGCG
AGCTGGGCCAGGGCTACTGGTTTGCCCGGCCCATGGCGGCACAATCGATTGATTGGACGCACGCGCCCGCGTTCAACTAG

Upstream 100 bases:

>100_bases
TATCACTGACATTGCTCAGAAAACCAGTCACCCTTGCACATAAGCGTCGCAGGATGTTTCTTGCTTTATAATCCAGACCT
TTCTCAAGGCCCGCTTTTTT

Downstream 100 bases:

>100_bases
TTCAGCCCTCTCTGACAACGCTCGTCCGGGTGTGCAATGCACCCTGACAGACTCACGCCGCCCTAAAGTCTTTTTGGTTA
TATCTGCATTCTTAAATAGT

Product: PAS:GGDEF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 639; Mature: 638

Protein sequence:

>639_residues
MSDYSRNALRTAVLYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIVGGEALFERQQ
QDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPSKFKSGRHGPEFYRQMYHSLQSAGQWSG
EIWNRRKSGEIYPQWQTIRSIKGEDGQPRHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSARSS
RRGCALLVVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVKNCTHMVHAAALAQQVINAFK
APYPIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKTDGREGFALYTEELTAQAQQRVQLASELRQAIEQDEL
RVFYQPVYDLVTGRICAVEALVRWQHPTRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIASVAVNVS
SRLFSRGDVDRQVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYSSLLRLKSMPVQKL
KIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQASFLLSNGCELGQGYWFARPMAAQSIDWTHAPAFN

Sequences:

>Translated_639_residues
MSDYSRNALRTAVLYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIVGGEALFERQQ
QDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPSKFKSGRHGPEFYRQMYHSLQSAGQWSG
EIWNRRKSGEIYPQWQTIRSIKGEDGQPRHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSARSS
RRGCALLVVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVKNCTHMVHAAALAQQVINAFK
APYPIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKTDGREGFALYTEELTAQAQQRVQLASELRQAIEQDEL
RVFYQPVYDLVTGRICAVEALVRWQHPTRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIASVAVNVS
SRLFSRGDVDRQVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYSSLLRLKSMPVQKL
KIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQASFLLSNGCELGQGYWFARPMAAQSIDWTHAPAFN
>Mature_638_residues
SDYSRNALRTAVLYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIFIARDRLKAIVGGEALFERQQQ
DYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDITGYQADEVLGFNPSKFKSGRHGPEFYRQMYHSLQSAGQWSGE
IWNRRKSGEIYPQWQTIRSIKGEDGQPRHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSARSSR
RGCALLVVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVKNCTHMVHAAALAQQVINAFKA
PYPIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALFKAKTDGREGFALYTEELTAQAQQRVQLASELRQAIEQDELR
VFYQPVYDLVTGRICAVEALVRWQHPTRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIASVAVNVSS
RLFSRGDVDRQVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAIDDFGTGYSSLLRLKSMPVQKLK
IDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIEHANQASFLLSNGCELGQGYWFARPMAAQSIDWTHAPAFN

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 MHYT domain [H]

Homologues:

Organism=Escherichia coli, GI1787541, Length=543, Percent_Identity=32.5966850828729, Blast_Score=306, Evalue=3e-84,
Organism=Escherichia coli, GI87081921, Length=513, Percent_Identity=30.6042884990253, Blast_Score=246, Evalue=4e-66,
Organism=Escherichia coli, GI226510982, Length=437, Percent_Identity=31.8077803203661, Blast_Score=223, Evalue=3e-59,
Organism=Escherichia coli, GI1790496, Length=239, Percent_Identity=33.8912133891213, Blast_Score=147, Evalue=2e-36,
Organism=Escherichia coli, GI87081845, Length=246, Percent_Identity=37.3983739837398, Blast_Score=142, Evalue=7e-35,
Organism=Escherichia coli, GI87081743, Length=238, Percent_Identity=31.5126050420168, Blast_Score=136, Evalue=5e-33,
Organism=Escherichia coli, GI1786507, Length=238, Percent_Identity=31.0924369747899, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI1788502, Length=257, Percent_Identity=29.5719844357977, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1787055, Length=255, Percent_Identity=30.9803921568627, Blast_Score=129, Evalue=5e-31,
Organism=Escherichia coli, GI1788849, Length=465, Percent_Identity=26.4516129032258, Blast_Score=129, Evalue=6e-31,
Organism=Escherichia coli, GI87081980, Length=246, Percent_Identity=33.3333333333333, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788381, Length=539, Percent_Identity=25.2319109461967, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI87082096, Length=428, Percent_Identity=25.2336448598131, Blast_Score=110, Evalue=2e-25,
Organism=Escherichia coli, GI87081881, Length=250, Percent_Identity=31.2, Blast_Score=96, Evalue=7e-21,
Organism=Escherichia coli, GI87081977, Length=153, Percent_Identity=33.3333333333333, Blast_Score=84, Evalue=3e-17,
Organism=Escherichia coli, GI1788956, Length=162, Percent_Identity=35.8024691358025, Blast_Score=80, Evalue=4e-16,
Organism=Escherichia coli, GI1786584, Length=176, Percent_Identity=26.1363636363636, Blast_Score=79, Evalue=9e-16,
Organism=Escherichia coli, GI145693134, Length=165, Percent_Identity=30.3030303030303, Blast_Score=76, Evalue=6e-15,
Organism=Escherichia coli, GI1787262, Length=162, Percent_Identity=29.0123456790123, Blast_Score=74, Evalue=3e-14,
Organism=Escherichia coli, GI1787802, Length=178, Percent_Identity=28.0898876404494, Blast_Score=73, Evalue=6e-14,
Organism=Escherichia coli, GI1787410, Length=223, Percent_Identity=25.1121076233184, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789650, Length=519, Percent_Identity=20.4238921001927, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787816, Length=165, Percent_Identity=30.9090909090909, Blast_Score=66, Evalue=6e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT [H]

EC number: NA

Molecular weight: Translated: 70344; Mature: 70213

Theoretical pI: Translated: 5.19; Mature: 5.19

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDYSRNALRTAVLYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIF
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IARDRLKAIVGGEALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDIT
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEEEEEE
GYQADEVLGFNPSKFKSGRHGPEFYRQMYHSLQSAGQWSGEIWNRRKSGEIYPQWQTIRS
CCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHH
IKGEDGQPRHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSARSS
CCCCCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
RRGCALLVVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVK
CCCEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHH
NCTHMVHAAALAQQVINAFKAPYPIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEECCCCCHHHHHHHHHHHHHHE
KAKTDGREGFALYTEELTAQAQQRVQLASELRQAIEQDELRVFYQPVYDLVTGRICAVEA
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
LVRWQHPTRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIASVAVNVS
HHHCCCCCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
SRLFSRGDVDRQVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAID
HHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCHHHHHHHHHHHHHCCCEEEEC
DFGTGYSSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIE
CCCCCHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HANQASFLLSNGCELGQGYWFARPMAAQSIDWTHAPAFN
HHHHHHHHHHCCCCCCCCEEEECCHHHCCCCCCCCCCCC
>Mature Secondary Structure 
SDYSRNALRTAVLYGLLSILWFATGSALLSFFVKDPARLAVGQQMIGYGWALLSTVMIF
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHH
IARDRLKAIVGGEALFERQQQDYDRLLLAAVVFDSTREGVLVSDAEGRIVHVNRAFVDIT
HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCEEEEEEEEEEEE
GYQADEVLGFNPSKFKSGRHGPEFYRQMYHSLQSAGQWSGEIWNRRKSGEIYPQWQTIRS
CCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCHHHHHH
IKGEDGQPRHFVAVFSDITAIKRSEQELAQLAHYDALTELPNRLLLTDRISQALTSARSS
CCCCCCCCCEEHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHC
RRGCALLVVDLDNFRNINDSLGHNIGDEVLKAAAERLNALADSGMTVSRLGGDEFALLVK
CCCEEEEEEECCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHCCCEEECCCCCHHHHHHH
NCTHMVHAAALAQQVINAFKAPYPIAGHQLFVTASIGISLFPGDALTAEQLLRNADSALF
HHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCEEECCCCCHHHHHHHHHHHHHHE
KAKTDGREGFALYTEELTAQAQQRVQLASELRQAIEQDELRVFYQPVYDLVTGRICAVEA
EECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
LVRWQHPTRGMVSPGDFIPIAEQNGLIADIDAWVLNTACRQMQAWLAEGVSIASVAVNVS
HHHCCCCCCCCCCCCCEEEEECCCCCEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
SRLFSRGDVDRQVAEVLNETGLDPAFLELEVTESAVMEDPEQAIEQLHRLRELGLSLAID
HHHHHCCCHHHHHHHHHHHCCCCCEEEEEEECHHHHHCCHHHHHHHHHHHHHCCCEEEEC
DFGTGYSSLLRLKSMPVQKLKIDQGFVAGLPGDVDDIAIVRAVIALASSLGMRVLAEGIE
CCCCCHHHHHHHHCCCHHHEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
HANQASFLLSNGCELGQGYWFARPMAAQSIDWTHAPAFN
HHHHHHHHHHCCCCCCCCEEEECCHHHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]