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The map label for this gene is ydcN [C]

Identifier: 62391622

GI number: 62391622

Start: 2946533

End: 2947102

Strand: Reverse

Name: ydcN [C]

Synonym: cg3087

Alternate gene names: 62391622

Gene position: 2947102-2946533 (Counterclockwise)

Preceding gene: 62391628

Following gene: 62391621

Centisome position: 89.78

GC content: 55.44

Gene sequence:

>570_bases
ATGGAAGACGATCTCAGTGCTGCTCTCGTCAAAGCGCTTTTCGACGCGCGAACCCAACGCAGGCTCTCTATCTCGGCGTT
AGCTGAATCCTCCGGTGTGTCGCGAGCAATGATTTCCCGCGTGGAAAACGCAGAGGCGCAACCAAGCGCTGCATTACTTG
GACGCCTTTCCGGTGCATTGGGTATGACGCTTTCGGAGCTCATTGCACAGGCTGAAGGTGGCTATGACCGGGGCGCTCGG
CGGTCAAAGCAGTCTGTATGGACAGATCCAGCTACCGGTTACACACGGCGTGCAGTGTCACAGCCGTCAGAATCCCCACT
AGAACTAGTGGAAGTAATGCTGCCTCCTGGGGCGGAAGTTGGCTACCCAGCTGATGCTTATCGTTTCATGGATCAGGTGG
TCTGGGTACTCGAAGGGGCCGTTCGTATTACTGAAGGTGAAGAGGTCCACGAACTTTCAACGGGGGATTGTCTACGGTTT
GGGCCTCCGCGAGATACCGACTTTGCTAATCCCACCACCGTAGCCACTAGGTATTTAGTTGCCTTGGACAAGCGTGTACC
TCGTGCTTGA

Upstream 100 bases:

>100_bases
GTTTTGTGCAATCCAATGCTACTCCCACAGAGCGGGCTACTTTCTCTAAAAATGTTCTCATAGTAGATAAAATTGTTCTT
AAAGCGACATTATTGTCTGC

Downstream 100 bases:

>100_bases
TATAACAAGTAAGGAAGCCTGATGAATTTTTACCCACCATCTGTACCTATTAACCCTGCGTGGCGTCCACCCACAGTAAC
TGTGCAAGCGGGACGGCCAG

Product: LacI family regulatory protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcriptional Regulator XRE Family; Transcriptional Regulator Protein; Helix-Turn-Helix Domain Protein; Xre Family xin-Antitoxin System Antitoxin Component; Transcription Regulator Protein; Transcriptional Regulatory Protein; Helix-Turn-Helix Domain-Containing Protein; Helix-Turn-Helix Family Protein; Transcriptional Regulator With Cupin 2 Conserved Barrel; Transcriptional Regulator Protein LacI Family; HTH-Type Transcriptional Regulatory Protein; Transcriptional Regulatory Protein With Hth Domain

Number of amino acids: Translated: 189; Mature: 189

Protein sequence:

>189_residues
MEDDLSAALVKALFDARTQRRLSISALAESSGVSRAMISRVENAEAQPSAALLGRLSGALGMTLSELIAQAEGGYDRGAR
RSKQSVWTDPATGYTRRAVSQPSESPLELVEVMLPPGAEVGYPADAYRFMDQVVWVLEGAVRITEGEEVHELSTGDCLRF
GPPRDTDFANPTTVATRYLVALDKRVPRA

Sequences:

>Translated_189_residues
MEDDLSAALVKALFDARTQRRLSISALAESSGVSRAMISRVENAEAQPSAALLGRLSGALGMTLSELIAQAEGGYDRGAR
RSKQSVWTDPATGYTRRAVSQPSESPLELVEVMLPPGAEVGYPADAYRFMDQVVWVLEGAVRITEGEEVHELSTGDCLRF
GPPRDTDFANPTTVATRYLVALDKRVPRA
>Mature_189_residues
MEDDLSAALVKALFDARTQRRLSISALAESSGVSRAMISRVENAEAQPSAALLGRLSGALGMTLSELIAQAEGGYDRGAR
RSKQSVWTDPATGYTRRAVSQPSESPLELVEVMLPPGAEVGYPADAYRFMDQVVWVLEGAVRITEGEEVHELSTGDCLRF
GPPRDTDFANPTTVATRYLVALDKRVPRA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 20425; Mature: 20425

Theoretical pI: Translated: 4.77; Mature: 4.77

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEDDLSAALVKALFDARTQRRLSISALAESSGVSRAMISRVENAEAQPSAALLGRLSGAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
GMTLSELIAQAEGGYDRGARRSKQSVWTDPATGYTRRAVSQPSESPLELVEVMLPPGAEV
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCC
GYPADAYRFMDQVVWVLEGAVRITEGEEVHELSTGDCLRFGPPRDTDFANPTTVATRYLV
CCCHHHHHHHHHHHHHHHCCEEECCCCHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHH
ALDKRVPRA
HHHHHCCCC
>Mature Secondary Structure
MEDDLSAALVKALFDARTQRRLSISALAESSGVSRAMISRVENAEAQPSAALLGRLSGAL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCHHHHHHHHHHHHH
GMTLSELIAQAEGGYDRGARRSKQSVWTDPATGYTRRAVSQPSESPLELVEVMLPPGAEV
HHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHCCCCCCHHHHHHHHCCCCCCC
GYPADAYRFMDQVVWVLEGAVRITEGEEVHELSTGDCLRFGPPRDTDFANPTTVATRYLV
CCCHHHHHHHHHHHHHHHCCEEECCCCHHHHCCCCCEEECCCCCCCCCCCHHHHHHHHHH
ALDKRVPRA
HHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA