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The map label for this gene is ydeB [H]

Identifier: 62391499

GI number: 62391499

Start: 2802462

End: 2803058

Strand: Reverse

Name: ydeB [H]

Synonym: cg2946

Alternate gene names: 62391499

Gene position: 2803058-2802462 (Counterclockwise)

Preceding gene: 62391505

Following gene: 62391498

Centisome position: 85.39

GC content: 56.45

Gene sequence:

>597_bases
ATGGAATTCAAGGTCGGAGATACCGTCGTTTACCCGCACCACGGAGCTGCAATTATTTCAGCCCTGGAGCAGCGTGAAAT
GAATGGTGAGACGGTGGACTACCTGGTTCTCCAGATCAATCATTCCGATCTCGTCGTTCGCGTTCCAGCAAAGAACGCTG
AACTCGTTGGCGTGCGTGACGTTGTCGGCGAGGAGGGCCTGCAGAAGGTTTTCTCTGTTCTTCGTGAAATTGACGTCGAA
GAAGCCGGCAACTGGTCCCGCCGTTACAAGGCTAACCAGGAGCGTTTGGCTTCCGGTGACGTGAACAAGGTCGCTGAGGT
TGTCCGTGACCTGTGGCGTCGTGATCAGGATCGTGGCCTTTCCGCTGGTGAGAAGCGCATGCTCTCCAAGGCGCGTCAGG
TTCTTGTTGGTGAGCTCGCGCTCGCCGAAACCGTGGACGATGAGAAGGCGGATGCTTTCCTCAGCCAGGTCGATGAGACC
ATTGCTCGCCACCGCGCTGACCTGCTCGGCGACGAGGAAGAGAAGAAGGACGCATTCGACGACTTCGACGATTCCGACGT
GGATCTTGACGATCTGAGCTTCGACGACGAAGATTAG

Upstream 100 bases:

>100_bases
GCGCAGCAGGGTGAAGTATTAAATAGGTCGCTTGCATGGACAATGCGGGCGCCACCGGCTGGTTCTAGCAAAAATGGAAC
CGCCATTAGAAGGAGTGGGA

Downstream 100 bases:

>100_bases
ACGCCCATGTCGTCTACACGAATCCCCGTCATCGCACTCCTCGCGGCGGCGGGGCGCGGAACCCGCCTCGGCGGACCCAT
CCCCAAAGCATTCGTCACGT

Product: CarD-like transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 198; Mature: 198

Protein sequence:

>198_residues
MEFKVGDTVVYPHHGAAIISALEQREMNGETVDYLVLQINHSDLVVRVPAKNAELVGVRDVVGEEGLQKVFSVLREIDVE
EAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLSKARQVLVGELALAETVDDEKADAFLSQVDET
IARHRADLLGDEEEKKDAFDDFDDSDVDLDDLSFDDED

Sequences:

>Translated_198_residues
MEFKVGDTVVYPHHGAAIISALEQREMNGETVDYLVLQINHSDLVVRVPAKNAELVGVRDVVGEEGLQKVFSVLREIDVE
EAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLSKARQVLVGELALAETVDDEKADAFLSQVDET
IARHRADLLGDEEEKKDAFDDFDDSDVDLDDLSFDDED
>Mature_198_residues
MEFKVGDTVVYPHHGAAIISALEQREMNGETVDYLVLQINHSDLVVRVPAKNAELVGVRDVVGEEGLQKVFSVLREIDVE
EAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGLSAGEKRMLSKARQVLVGELALAETVDDEKADAFLSQVDET
IARHRADLLGDEEEKKDAFDDFDDSDVDLDDLSFDDED

Specific function: Unknown

COG id: COG1329

COG function: function code K; Transcriptional regulators, similar to M. xanthus CarD

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003711 [H]

Pfam domain/function: PF02559 CarD_TRCF [H]

EC number: NA

Molecular weight: Translated: 22259; Mature: 22259

Theoretical pI: Translated: 4.18; Mature: 4.18

Prosite motif: PS01034 GLYCOSYL_HYDROL_F16

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFKVGDTVVYPHHGAAIISALEQREMNGETVDYLVLQINHSDLVVRVPAKNAELVGVRD
CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCCCCEEHHHH
VVGEEGLQKVFSVLREIDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGL
HHHHHHHHHHHHHHHHHCHHHCCCHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCCCCC
SAGEKRMLSKARQVLVGELALAETVDDEKADAFLSQVDETIARHRADLLGDEEEKKDAFD
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
DFDDSDVDLDDLSFDDED
CCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MEFKVGDTVVYPHHGAAIISALEQREMNGETVDYLVLQINHSDLVVRVPAKNAELVGVRD
CCCCCCCEEEECCCHHHHHHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCCCCEEHHHH
VVGEEGLQKVFSVLREIDVEEAGNWSRRYKANQERLASGDVNKVAEVVRDLWRRDQDRGL
HHHHHHHHHHHHHHHHHCHHHCCCHHHHHHCCHHHHHCCCHHHHHHHHHHHHHCCCCCCC
SAGEKRMLSKARQVLVGELALAETVDDEKADAFLSQVDETIARHRADLLGDEEEKKDAFD
CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHCC
DFDDSDVDLDDLSFDDED
CCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]