| Definition | Corynebacterium glutamicum ATCC 13032, complete genome. |
|---|---|
| Accession | NC_006958 |
| Length | 3,282,708 |
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The map label for this gene is yghA [H]
Identifier: 62390970
GI number: 62390970
Start: 2224713
End: 2225600
Strand: Reverse
Name: yghA [H]
Synonym: cg2342
Alternate gene names: 62390970
Gene position: 2225600-2224713 (Counterclockwise)
Preceding gene: 62390971
Following gene: 62390966
Centisome position: 67.8
GC content: 51.46
Gene sequence:
>888_bases ATGATTTCATTGCTAAATGATCCACGTACGCTATTCCCGAAAGTCGATCCCCCAAAGCAAAGCCAGCCGGAACCAGGCCT AGATATAAAACTTTCCCCCCAAGCCGATATTGGTCTCTCCAGCTATCAAGGAAGTGGAAGGCTTAAGGGCCGCAAGGCTC TTATTACTGGTGGCGATTCTGGGATTGGAGCTGCCGTAGCAATCGCTTATGCTCGCGAGGGGGCAGATGTTGCGATCGCT TACTTGCCCGAAGAACAAGCCGATGCTGACAGAGTGCTCCAAGCAATCGAGGAAACAGGTCAAAAAGCTTTTTCTTTCCC TGGTGATCTCCGTGATCCAGAATACTGTCGCTCGCTGGTCCAAGAGACGGTGAACGCTTTAGGTGGCCTAGACATCTTGG TCAACAACGCGTCACGTCAGGTGTGGGCACCTGGTTTGACCGAAATTACCGACGAAAACTTCGACCAGACTTTGCAGGTT AACCTCTATGGTAGTTTTCGGGTTACCAAAGCAGCTATACCTCATCTGAAGCCCGGATCATCGATAATCTTTACATCGTC CATTCAGGCGTACCAACCTTCGGAAACCCTCTTGGATTACGCCATGACTAAGGCGGCATTGAACAATTTGTCAAAGGGCT TGGCAAGTAGTCTGATAGGCGATGGCATTCGGGTAAATTCTGTAGCCCCAGGTCCTTTCTGGACGCCGTTGCAACCCAGC CATGGTCAGCCACAAGAGAAAATAGAAGGATTTGGCCAGCACGCTCCGATTGGAAGAGCGGGTCACCCTGTTGAGTTGGC AGGTGCGTACGTTTTTCTCGCTTCTGACGAAGCCAGCTATGTGGTAGGAGAAACCCTGGGAGTCACAGGTGGGACGCCCA CCCCATAG
Upstream 100 bases:
>100_bases TATTTTCGGAAATTTATACAGCAATCCTCGAAATCCTAATAAAGATCCCTTATCGTGGGAGAGGTACGGTAGTTCGTTCG AGGACAACGTCGAGAAAGGC
Downstream 100 bases:
>100_bases TCGGTACAAGCGGAATCACTTTCTCAGTTAAGTTTTACGAAGGGGCCTGAAACCGGTCGATTTTTTCGACGACGGAAGCT ACGACATCTTGCAGCTTCCA
Product: dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 295; Mature: 295
Protein sequence:
>295_residues MISLLNDPRTLFPKVDPPKQSQPEPGLDIKLSPQADIGLSSYQGSGRLKGRKALITGGDSGIGAAVAIAYAREGADVAIA YLPEEQADADRVLQAIEETGQKAFSFPGDLRDPEYCRSLVQETVNALGGLDILVNNASRQVWAPGLTEITDENFDQTLQV NLYGSFRVTKAAIPHLKPGSSIIFTSSIQAYQPSETLLDYAMTKAALNNLSKGLASSLIGDGIRVNSVAPGPFWTPLQPS HGQPQEKIEGFGQHAPIGRAGHPVELAGAYVFLASDEASYVVGETLGVTGGTPTP
Sequences:
>Translated_295_residues MISLLNDPRTLFPKVDPPKQSQPEPGLDIKLSPQADIGLSSYQGSGRLKGRKALITGGDSGIGAAVAIAYAREGADVAIA YLPEEQADADRVLQAIEETGQKAFSFPGDLRDPEYCRSLVQETVNALGGLDILVNNASRQVWAPGLTEITDENFDQTLQV NLYGSFRVTKAAIPHLKPGSSIIFTSSIQAYQPSETLLDYAMTKAALNNLSKGLASSLIGDGIRVNSVAPGPFWTPLQPS HGQPQEKIEGFGQHAPIGRAGHPVELAGAYVFLASDEASYVVGETLGVTGGTPTP >Mature_295_residues MISLLNDPRTLFPKVDPPKQSQPEPGLDIKLSPQADIGLSSYQGSGRLKGRKALITGGDSGIGAAVAIAYAREGADVAIA YLPEEQADADRVLQAIEETGQKAFSFPGDLRDPEYCRSLVQETVNALGGLDILVNNASRQVWAPGLTEITDENFDQTLQV NLYGSFRVTKAAIPHLKPGSSIIFTSSIQAYQPSETLLDYAMTKAALNNLSKGLASSLIGDGIRVNSVAPGPFWTPLQPS HGQPQEKIEGFGQHAPIGRAGHPVELAGAYVFLASDEASYVVGETLGVTGGTPTP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI32483357, Length=249, Percent_Identity=34.5381526104418, Blast_Score=133, Evalue=2e-31, Organism=Homo sapiens, GI126723750, Length=253, Percent_Identity=32.0158102766798, Blast_Score=107, Evalue=2e-23, Organism=Homo sapiens, GI5031737, Length=246, Percent_Identity=31.3008130081301, Blast_Score=106, Evalue=2e-23, Organism=Homo sapiens, GI15277342, Length=255, Percent_Identity=31.3725490196078, Blast_Score=103, Evalue=2e-22, Organism=Homo sapiens, GI19923817, Length=262, Percent_Identity=30.5343511450382, Blast_Score=103, Evalue=3e-22, Organism=Homo sapiens, GI59889578, Length=228, Percent_Identity=33.3333333333333, Blast_Score=102, Evalue=3e-22, Organism=Homo sapiens, GI10190704, Length=249, Percent_Identity=28.9156626506024, Blast_Score=89, Evalue=4e-18, Organism=Homo sapiens, GI66933014, Length=256, Percent_Identity=30.859375, Blast_Score=89, Evalue=7e-18, Organism=Homo sapiens, GI7705925, Length=248, Percent_Identity=31.0483870967742, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI40254992, Length=240, Percent_Identity=32.0833333333333, Blast_Score=84, Evalue=1e-16, Organism=Homo sapiens, GI4504505, Length=193, Percent_Identity=32.1243523316062, Blast_Score=84, Evalue=2e-16, Organism=Homo sapiens, GI126723191, Length=183, Percent_Identity=31.6939890710383, Blast_Score=82, Evalue=4e-16, Organism=Homo sapiens, GI33667109, Length=191, Percent_Identity=31.413612565445, Blast_Score=81, Evalue=9e-16, Organism=Homo sapiens, GI40254986, Length=141, Percent_Identity=36.1702127659575, Blast_Score=80, Evalue=3e-15, Organism=Homo sapiens, GI31542939, Length=215, Percent_Identity=28.3720930232558, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4503301, Length=210, Percent_Identity=29.5238095238095, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI4758504, Length=258, Percent_Identity=27.5193798449612, Blast_Score=71, Evalue=1e-12, Organism=Homo sapiens, GI302344755, Length=103, Percent_Identity=37.8640776699029, Blast_Score=67, Evalue=1e-11, Organism=Escherichia coli, GI1789378, Length=290, Percent_Identity=57.5862068965517, Blast_Score=319, Evalue=2e-88, Organism=Escherichia coli, GI87082100, Length=262, Percent_Identity=32.824427480916, Blast_Score=126, Evalue=2e-30, Organism=Escherichia coli, GI2367175, Length=246, Percent_Identity=33.3333333333333, Blast_Score=118, Evalue=4e-28, Organism=Escherichia coli, GI1787905, Length=247, Percent_Identity=33.1983805668016, Blast_Score=111, Evalue=6e-26, Organism=Escherichia coli, GI1787335, Length=249, Percent_Identity=34.9397590361446, Blast_Score=109, Evalue=2e-25, Organism=Escherichia coli, GI1790717, Length=246, Percent_Identity=29.6747967479675, Blast_Score=108, Evalue=4e-25, Organism=Escherichia coli, GI2367365, Length=247, Percent_Identity=31.9838056680162, Blast_Score=103, Evalue=1e-23, Organism=Escherichia coli, GI1789208, Length=247, Percent_Identity=28.3400809716599, Blast_Score=102, Evalue=4e-23, Organism=Escherichia coli, GI1788459, Length=244, Percent_Identity=31.5573770491803, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI1786812, Length=259, Percent_Identity=30.1158301158301, Blast_Score=97, Evalue=2e-21, Organism=Escherichia coli, GI87082160, Length=249, Percent_Identity=30.9236947791165, Blast_Score=96, Evalue=2e-21, Organism=Escherichia coli, GI1786701, Length=210, Percent_Identity=27.6190476190476, Blast_Score=63, Evalue=3e-11, Organism=Escherichia coli, GI1787526, Length=244, Percent_Identity=28.6885245901639, Blast_Score=61, Evalue=7e-11, Organism=Caenorhabditis elegans, GI17560676, Length=250, Percent_Identity=36.8, Blast_Score=130, Evalue=8e-31, Organism=Caenorhabditis elegans, GI17561402, Length=252, Percent_Identity=32.5396825396825, Blast_Score=127, Evalue=1e-29, Organism=Caenorhabditis elegans, GI17531453, Length=278, Percent_Identity=34.1726618705036, Blast_Score=124, Evalue=5e-29, Organism=Caenorhabditis elegans, GI193204405, Length=264, Percent_Identity=35.2272727272727, Blast_Score=122, Evalue=2e-28, Organism=Caenorhabditis elegans, GI17562906, Length=262, Percent_Identity=33.206106870229, Blast_Score=119, Evalue=1e-27, Organism=Caenorhabditis elegans, GI17562904, Length=262, Percent_Identity=33.206106870229, Blast_Score=112, Evalue=2e-25, Organism=Caenorhabditis elegans, GI25147288, Length=251, Percent_Identity=35.4581673306773, Blast_Score=111, Evalue=4e-25, Organism=Caenorhabditis elegans, GI17559104, Length=262, Percent_Identity=33.206106870229, Blast_Score=111, Evalue=5e-25, Organism=Caenorhabditis elegans, GI17562910, Length=264, Percent_Identity=32.5757575757576, Blast_Score=108, Evalue=3e-24, Organism=Caenorhabditis elegans, GI17560220, Length=262, Percent_Identity=33.206106870229, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17551412, Length=263, Percent_Identity=32.6996197718631, Blast_Score=108, Evalue=4e-24, Organism=Caenorhabditis elegans, GI17562908, Length=262, Percent_Identity=30.9160305343511, Blast_Score=107, Evalue=6e-24, Organism=Caenorhabditis elegans, GI71994604, Length=254, Percent_Identity=30.7086614173228, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17538480, Length=266, Percent_Identity=31.5789473684211, Blast_Score=106, Evalue=1e-23, Organism=Caenorhabditis elegans, GI17560150, Length=262, Percent_Identity=32.4427480916031, Blast_Score=105, Evalue=2e-23, Organism=Caenorhabditis elegans, GI71994600, Length=258, Percent_Identity=29.8449612403101, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI72000259, Length=261, Percent_Identity=31.0344827586207, Blast_Score=103, Evalue=1e-22, Organism=Caenorhabditis elegans, GI17544670, Length=269, Percent_Identity=27.5092936802974, Blast_Score=102, Evalue=3e-22, Organism=Caenorhabditis elegans, GI17562990, Length=263, Percent_Identity=31.5589353612167, Blast_Score=101, Evalue=5e-22, Organism=Caenorhabditis elegans, GI17563726, Length=260, Percent_Identity=31.5384615384615, Blast_Score=100, Evalue=9e-22, Organism=Caenorhabditis elegans, GI17555706, Length=251, Percent_Identity=33.8645418326693, Blast_Score=99, Evalue=4e-21, Organism=Caenorhabditis elegans, GI17560332, Length=263, Percent_Identity=31.1787072243346, Blast_Score=96, Evalue=3e-20, Organism=Caenorhabditis elegans, GI17565030, Length=263, Percent_Identity=33.0798479087452, Blast_Score=92, Evalue=3e-19, Organism=Caenorhabditis elegans, GI17536025, Length=259, Percent_Identity=31.6602316602317, Blast_Score=92, Evalue=4e-19, Organism=Caenorhabditis elegans, GI17538486, Length=265, Percent_Identity=30.9433962264151, Blast_Score=91, Evalue=6e-19, Organism=Caenorhabditis elegans, GI17536651, Length=259, Percent_Identity=30.8880308880309, Blast_Score=89, Evalue=4e-18, Organism=Caenorhabditis elegans, GI17538182, Length=263, Percent_Identity=31.1787072243346, Blast_Score=85, Evalue=5e-17, Organism=Caenorhabditis elegans, GI17508651, Length=257, Percent_Identity=29.9610894941634, Blast_Score=84, Evalue=6e-17, Organism=Caenorhabditis elegans, GI71982365, Length=209, Percent_Identity=29.6650717703349, Blast_Score=84, Evalue=7e-17, Organism=Caenorhabditis elegans, GI17561272, Length=260, Percent_Identity=30, Blast_Score=82, Evalue=3e-16, Organism=Caenorhabditis elegans, GI115534694, Length=244, Percent_Identity=28.2786885245902, Blast_Score=82, Evalue=4e-16, Organism=Caenorhabditis elegans, GI17564282, Length=249, Percent_Identity=26.9076305220884, Blast_Score=75, Evalue=3e-14, Organism=Caenorhabditis elegans, GI17568967, Length=195, Percent_Identity=28.7179487179487, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17567345, Length=195, Percent_Identity=26.1538461538462, Blast_Score=66, Evalue=2e-11, Organism=Caenorhabditis elegans, GI17558628, Length=147, Percent_Identity=30.6122448979592, Blast_Score=65, Evalue=4e-11, Organism=Saccharomyces cerevisiae, GI6324126, Length=259, Percent_Identity=27.027027027027, Blast_Score=73, Evalue=7e-14, Organism=Saccharomyces cerevisiae, GI6322861, Length=198, Percent_Identity=27.7777777777778, Blast_Score=64, Evalue=2e-11, Organism=Drosophila melanogaster, GI21355319, Length=247, Percent_Identity=34.0080971659919, Blast_Score=137, Evalue=9e-33, Organism=Drosophila melanogaster, GI23397609, Length=249, Percent_Identity=34.9397590361446, Blast_Score=125, Evalue=3e-29, Organism=Drosophila melanogaster, GI24644339, Length=253, Percent_Identity=34.3873517786561, Blast_Score=117, Evalue=9e-27, Organism=Drosophila melanogaster, GI21357041, Length=252, Percent_Identity=32.9365079365079, Blast_Score=111, Evalue=5e-25, Organism=Drosophila melanogaster, GI28571526, Length=252, Percent_Identity=32.1428571428571, Blast_Score=109, Evalue=3e-24, Organism=Drosophila melanogaster, GI24639444, Length=256, Percent_Identity=33.59375, Blast_Score=96, Evalue=3e-20, Organism=Drosophila melanogaster, GI24643142, Length=254, Percent_Identity=32.2834645669291, Blast_Score=96, Evalue=4e-20, Organism=Drosophila melanogaster, GI24644337, Length=251, Percent_Identity=32.6693227091633, Blast_Score=94, Evalue=1e-19, Organism=Drosophila melanogaster, GI21357673, Length=198, Percent_Identity=31.8181818181818, Blast_Score=90, Evalue=2e-18, Organism=Drosophila melanogaster, GI17737361, Length=258, Percent_Identity=26.7441860465116, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI18859837, Length=201, Percent_Identity=28.3582089552239, Blast_Score=70, Evalue=1e-12, Organism=Drosophila melanogaster, GI161076371, Length=198, Percent_Identity=28.7878787878788, Blast_Score=64, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 31168; Mature: 31168
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MISLLNDPRTLFPKVDPPKQSQPEPGLDIKLSPQADIGLSSYQGSGRLKGRKALITGGDS CCCCCCCCHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCC GIGAAVAIAYAREGADVAIAYLPEEQADADRVLQAIEETGQKAFSFPGDLRDPEYCRSLV CCCHHHHEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH QETVNALGGLDILVNNASRQVWAPGLTEITDENFDQTLQVNLYGSFRVTKAAIPHLKPGS HHHHHHHCCEEEEEECCCCEEECCCCHHHCCCCCCCEEEEEEEECEEEHHHHCCCCCCCC SIIFTSSIQAYQPSETLLDYAMTKAALNNLSKGLASSLIGDGIRVNSVAPGPFWTPLQPS CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCC HGQPQEKIEGFGQHAPIGRAGHPVELAGAYVFLASDEASYVVGETLGVTGGTPTP CCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCEEECCCCCCCC >Mature Secondary Structure MISLLNDPRTLFPKVDPPKQSQPEPGLDIKLSPQADIGLSSYQGSGRLKGRKALITGGDS CCCCCCCCHHHCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEEECCCC GIGAAVAIAYAREGADVAIAYLPEEQADADRVLQAIEETGQKAFSFPGDLRDPEYCRSLV CCCHHHHEEECCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHH QETVNALGGLDILVNNASRQVWAPGLTEITDENFDQTLQVNLYGSFRVTKAAIPHLKPGS HHHHHHHCCEEEEEECCCCEEECCCCHHHCCCCCCCEEEEEEEECEEEHHHHCCCCCCCC SIIFTSSIQAYQPSETLLDYAMTKAALNNLSKGLASSLIGDGIRVNSVAPGPFWTPLQPS CEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCCCCCCCCCC HGQPQEKIEGFGQHAPIGRAGHPVELAGAYVFLASDEASYVVGETLGVTGGTPTP CCCCHHHHHCCCCCCCCCCCCCCEEEEEEEEEEECCCCCEEECCEEECCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]