Click here to switch to the map view.

The map label for this gene is secD [H]

Identifier: 62390539

GI number: 62390539

Start: 1760272

End: 1762185

Strand: Reverse

Name: secD [H]

Synonym: cg1867

Alternate gene names: 62390539

Gene position: 1762185-1760272 (Counterclockwise)

Preceding gene: 62390540

Following gene: 62390538

Centisome position: 53.68

GC content: 56.17

Gene sequence:

>1914_bases
TTGGCTCGGCAAAAAAAGAGTGCCGCTAGCGCCTGGGAACGATGGCCAAAACGCGCAATAGCGTTGTTTGTGCTCATCGT
CGTTGGTGTTTATGCGTTGGTGCTGTTGACAGGCGATCGTTCTGCCACACCAAAATTGGGTATTGATCTGCAAGGCGGAA
CCCGAGTGACCCTCGTGCCGCAGGGGCAGGATCCAACTCAGGACCAGCTGAATCAGGCACGCACCATTCTGGAAAACCGT
GTGAACGGCATGGGCGTTTCAGGTGCAAGCGTGGTCGCTGACGGTAACACGCTGGTGATCACTGTTCCCGGGGAAAATAC
CGCACAGGCGCAATCCCTAGGACAGACCTCCCAGCTGCTGTTCCGTCCCGTTGGTCAGGCAGGAATGCCCGATATGACCA
CGTTGATGCCAGAGCTGGAAGAGATGGCCAACAGGTGGGTTGAATACGGCGTCATCACCGAAGAGCAGGCAAATGCCTCC
TTGGAGGAAATGAACACCGCTGTTGCATCGACCACTGCGGTGGAAGGCGAAGAAGCAACTGAGCCAGAACCCGTCACCGT
GTCGGCGACCCCTATGGATGAGCCAGCCAACTCCATTGAGGCAACACAGCGACGCCAGGAAATCACGGACATGCTGCGCA
CCGACCGCCAGTCCACCGATCCCACTGTCCAGATCGCTGCAAGTTCTTTGATGCAGTGCACCACTGATGAGATGGATCCT
TTGGCCGGCACCGATGATCCACGCCTGCCATTGGTGGCATGTGATCCAGCTGTAGGTGGCGTGTATGTACTTGATCCTGC
ACCTTTGCTCAACGGCGAAACCGATGAGGAAAATGGTGCGCGCCTAACCGGTAATGAGATCGATACCAACCGTCCCATCA
CCGGTGGATTCAACGCCCAGTCCGGCCAGATGGAAATCAGCTTTGCCTTCAAATCCGGCGATGGGGAAGAAGGCTCTGCA
ACTTGGTCCTCTCTGACCAGCCAGTACCTGCAGCAGCAGATCGCCATCACCCTGGACTCTCAGGTGATTTCTGCACCCGT
GATTCAGTCAGCAACCCCTGTGGGTTCTGCAACATCCATCACCGGTGACTTCACTCAAACTGAAGCCCAAGATCTGGCGA
ACAACCTGCGCTACGGTGCATTGCCCCTGAGCTTCGCAGGTGAAAACGGCGAGCGCGGCGGAACTACCACCACCGTTCCG
CCATCACTAGGCGCAGCATCCTTGAAGGCCGGACTGATCGCAGGCATCGTCGGCATCGCGCTGGTCGCCATCTTCGTGTT
CGCCTACTACCGCGTCTTCGGATTCGTTTCCCTGTTCACCCTGTTTGCCGCAGGCGTGTTGGTCTACGGCCTTCTGGTAC
TGCTGGGACGCTGGATCGGATATTCCCTAGACCTTGCTGGTATCGCCGGTTTGATCATCGGTATCGGTACCACCGCCGAC
TCCTTCGTGGTGTTCTATGAGCGCATCAAGGATGAGATCCGTGAAGGAAGATCCTTTAGATCTGCAGTACCTCGTGCATG
GGAAAGCGCCAAGCGCACCATCGTCACAGGCAACATGGTCACTTTGCTCGGCGCTATCGTGATTTACTTGCTCGCGGTCG
GCGAAGTCAAGGGCTTTGCCTTCACCCTGGGTCTGACCACCGTATTCGATCTCGTTGTCACCTTCCTGATCACGGCACCA
CTGGTTATCCTGGCATCACGCAACCCATTCTTTGCCAAGTCATCGGTCAACGGCATGGGACGAGTGATGAAGCTCGTTGA
AGAACGCCGCGCCAACGGTGAATTGGATGAGCCTGAGTACCTGAAAAAGATCCATGCCAAGAATGCGGCAGCTGATAAGG
CTTCCACTGACAATTCTTCCACTGACAATTCTGAAGCACCTGGCACCGATACGAACCAAGAGGAGGAGAAGTAG

Upstream 100 bases:

>100_bases
CGCACTCACCCACGCCACCTGGCGTGGGTGAGTGGCGCATGGAGTGGGTGGGCGTCGACAAGCGTGGTTGTCTGGTTGAT
TGGAATTGAAGGAGACTTTC

Downstream 100 bases:

>100_bases
CCATGACTGATTCCCAGACTGAATCACTGTCAACTCAGAGCGTAAAACCAGCCAAAAAACGCAGTTGGTTCAACAGCCTC
TACACCGGTGACGGCGGCAT

Product: preprotein translocase subunit SecD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 637; Mature: 636

Protein sequence:

>637_residues
MARQKKSAASAWERWPKRAIALFVLIVVGVYALVLLTGDRSATPKLGIDLQGGTRVTLVPQGQDPTQDQLNQARTILENR
VNGMGVSGASVVADGNTLVITVPGENTAQAQSLGQTSQLLFRPVGQAGMPDMTTLMPELEEMANRWVEYGVITEEQANAS
LEEMNTAVASTTAVEGEEATEPEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPTVQIAASSLMQCTTDEMDP
LAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPITGGFNAQSGQMEISFAFKSGDGEEGSA
TWSSLTSQYLQQQIAITLDSQVISAPVIQSATPVGSATSITGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVP
PSLGAASLKAGLIAGIVGIALVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLIIGIGTTAD
SFVVFYERIKDEIREGRSFRSAVPRAWESAKRTIVTGNMVTLLGAIVIYLLAVGEVKGFAFTLGLTTVFDLVVTFLITAP
LVILASRNPFFAKSSVNGMGRVMKLVEERRANGELDEPEYLKKIHAKNAAADKASTDNSSTDNSEAPGTDTNQEEEK

Sequences:

>Translated_637_residues
MARQKKSAASAWERWPKRAIALFVLIVVGVYALVLLTGDRSATPKLGIDLQGGTRVTLVPQGQDPTQDQLNQARTILENR
VNGMGVSGASVVADGNTLVITVPGENTAQAQSLGQTSQLLFRPVGQAGMPDMTTLMPELEEMANRWVEYGVITEEQANAS
LEEMNTAVASTTAVEGEEATEPEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPTVQIAASSLMQCTTDEMDP
LAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPITGGFNAQSGQMEISFAFKSGDGEEGSA
TWSSLTSQYLQQQIAITLDSQVISAPVIQSATPVGSATSITGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVP
PSLGAASLKAGLIAGIVGIALVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLIIGIGTTAD
SFVVFYERIKDEIREGRSFRSAVPRAWESAKRTIVTGNMVTLLGAIVIYLLAVGEVKGFAFTLGLTTVFDLVVTFLITAP
LVILASRNPFFAKSSVNGMGRVMKLVEERRANGELDEPEYLKKIHAKNAAADKASTDNSSTDNSEAPGTDTNQEEEK
>Mature_636_residues
ARQKKSAASAWERWPKRAIALFVLIVVGVYALVLLTGDRSATPKLGIDLQGGTRVTLVPQGQDPTQDQLNQARTILENRV
NGMGVSGASVVADGNTLVITVPGENTAQAQSLGQTSQLLFRPVGQAGMPDMTTLMPELEEMANRWVEYGVITEEQANASL
EEMNTAVASTTAVEGEEATEPEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPTVQIAASSLMQCTTDEMDPL
AGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPITGGFNAQSGQMEISFAFKSGDGEEGSAT
WSSLTSQYLQQQIAITLDSQVISAPVIQSATPVGSATSITGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVPP
SLGAASLKAGLIAGIVGIALVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLIIGIGTTADS
FVVFYERIKDEIREGRSFRSAVPRAWESAKRTIVTGNMVTLLGAIVIYLLAVGEVKGFAFTLGLTTVFDLVVTFLITAPL
VILASRNPFFAKSSVNGMGRVMKLVEERRANGELDEPEYLKKIHAKNAAADKASTDNSSTDNSEAPGTDTNQEEEK

Specific function: Involved in protein export [H]

COG id: COG0342

COG function: function code U; Preprotein translocase subunit SecD

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecD subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786609, Length=218, Percent_Identity=32.1100917431193, Blast_Score=108, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005791
- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 67708; Mature: 67577

Theoretical pI: Translated: 4.25; Mature: 4.25

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MARQKKSAASAWERWPKRAIALFVLIVVGVYALVLLTGDRSATPKLGIDLQGGTRVTLVP
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEE
QGQDPTQDQLNQARTILENRVNGMGVSGASVVADGNTLVITVPGENTAQAQSLGQTSQLL
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEECCCCCHHHHHHCHHHHHH
FRPVGQAGMPDMTTLMPELEEMANRWVEYGVITEEQANASLEEMNTAVASTTAVEGEEAT
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCC
EPEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPTVQIAASSLMQCTTDEMDP
CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
LAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPITGGFNAQ
CCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
SGQMEISFAFKSGDGEEGSATWSSLTSQYLQQQIAITLDSQVISAPVIQSATPVGSATSI
CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCCCCCCC
TGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLKAGLIAGIVGIA
CCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLIIGIGTTAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHH
SFVVFYERIKDEIREGRSFRSAVPRAWESAKRTIVTGNMVTLLGAIVIYLLAVGEVKGFA
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCE
FTLGLTTVFDLVVTFLITAPLVILASRNPFFAKSSVNGMGRVMKLVEERRANGELDEPEY
EHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
LKKIHAKNAAADKASTDNSSTDNSEAPGTDTNQEEEK
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
ARQKKSAASAWERWPKRAIALFVLIVVGVYALVLLTGDRSATPKLGIDLQGGTRVTLVP
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEECCCCEEEEEE
QGQDPTQDQLNQARTILENRVNGMGVSGASVVADGNTLVITVPGENTAQAQSLGQTSQLL
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCEEEECCCEEEEEECCCCCHHHHHHCHHHHHH
FRPVGQAGMPDMTTLMPELEEMANRWVEYGVITEEQANASLEEMNTAVASTTAVEGEEAT
HHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCC
EPEPVTVSATPMDEPANSIEATQRRQEITDMLRTDRQSTDPTVQIAASSLMQCTTDEMDP
CCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCC
LAGTDDPRLPLVACDPAVGGVYVLDPAPLLNGETDEENGARLTGNEIDTNRPITGGFNAQ
CCCCCCCCCCEEEECCCCCCEEEECCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCC
SGQMEISFAFKSGDGEEGSATWSSLTSQYLQQQIAITLDSQVISAPVIQSATPVGSATSI
CCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHEECCHHHHHHHHHCCCCCCCCCCC
TGDFTQTEAQDLANNLRYGALPLSFAGENGERGGTTTTVPPSLGAASLKAGLIAGIVGIA
CCCCHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
LVAIFVFAYYRVFGFVSLFTLFAAGVLVYGLLVLLGRWIGYSLDLAGIAGLIIGIGTTAD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCHH
SFVVFYERIKDEIREGRSFRSAVPRAWESAKRTIVTGNMVTLLGAIVIYLLAVGEVKGFA
HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCEEEECHHHHHHHHHHHHHHHHHHHCCCE
FTLGLTTVFDLVVTFLITAPLVILASRNPFFAKSSVNGMGRVMKLVEERRANGELDEPEY
EHHHHHHHHHHHHHHHHHHHHHEEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHH
LKKIHAKNAAADKASTDNSSTDNSEAPGTDTNQEEEK
HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]