Click here to switch to the map view.

The map label for this gene is secN

Identifier: 62390540

GI number: 62390540

Start: 1762474

End: 1762839

Strand: Reverse

Name: secN

Synonym: cg1868

Alternate gene names: NA

Gene position: 1762839-1762474 (Counterclockwise)

Preceding gene: 62390541

Following gene: 62390539

Centisome position: 53.7

GC content: 53.01

Gene sequence:

>366_bases
ATGGACATCGTTTTCCTCATAATTCTTCTAGCCATTTTTATCGTTCCCACTTTCCTCATGAGCCGCCGCCAGCGCGCACG
GATGACTGAAATCCAAAAGCTGCAGGACTCTGTCGTCCCAGGCGACCGCATCGTCACCACCGCGGGACAGCACGCAACGG
TCATTTCCACCACTGCAGAAACCGTTGATCTAGAGATCGCGCCGGGTATGATCAGCACTTTTGAAAAGCTTGCTATCGTG
CGTGTGCTGTCCAAGGCCAATGAACCTCAGATGTTGGATGAGCCGACGCTGTTTGATCAGCCAGAAGACGATCAGCCGAA
CGATGGTTTCGATGGACGCACTGACGGACATCCTGAGAATCGTTAG

Upstream 100 bases:

>100_bases
ATGGAGACACCTGGGGCTGGAACCACCAGAAGGCACCATCGGCGATTATTAGCCACCTTAGGTGGCCAGGATGTTCCATG
GTCTGGCAAACTAACTAACC

Downstream 100 bases:

>100_bases
AAATTAATAATAATTCAGCACCCTTTTGCTCATTACTTTCTGTGGGCAAGGGTGCTGTTTATATATCTACTCATATTGGT
AGCCAGACTCACAGGGGTAT

Product: preprotein translocase subunit YajC-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 121; Mature: 121

Protein sequence:

>121_residues
MDIVFLIILLAIFIVPTFLMSRRQRARMTEIQKLQDSVVPGDRIVTTAGQHATVISTTAETVDLEIAPGMISTFEKLAIV
RVLSKANEPQMLDEPTLFDQPEDDQPNDGFDGRTDGHPENR

Sequences:

>Translated_121_residues
MDIVFLIILLAIFIVPTFLMSRRQRARMTEIQKLQDSVVPGDRIVTTAGQHATVISTTAETVDLEIAPGMISTFEKLAIV
RVLSKANEPQMLDEPTLFDQPEDDQPNDGFDGRTDGHPENR
>Mature_121_residues
MDIVFLIILLAIFIVPTFLMSRRQRARMTEIQKLQDSVVPGDRIVTTAGQHATVISTTAETVDLEIAPGMISTFEKLAIV
RVLSKANEPQMLDEPTLFDQPEDDQPNDGFDGRTDGHPENR

Specific function: Unknown

COG id: COG1862

COG function: function code U; Preprotein translocase subunit YajC

Gene ontology:

Cell location: Secreted (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To M.leprae ML0486 [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003849 [H]

Pfam domain/function: PF02699 YajC [H]

EC number: NA

Molecular weight: Translated: 13508; Mature: 13508

Theoretical pI: Translated: 4.34; Mature: 4.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.1 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIVFLIILLAIFIVPTFLMSRRQRARMTEIQKLQDSVVPGDRIVTTAGQHATVISTTAE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCH
TVDLEIAPGMISTFEKLAIVRVLSKANEPQMLDEPTLFDQPEDDQPNDGFDGRTDGHPEN
HEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
R
C
>Mature Secondary Structure
MDIVFLIILLAIFIVPTFLMSRRQRARMTEIQKLQDSVVPGDRIVTTAGQHATVISTTAE
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCEEEEECCCH
TVDLEIAPGMISTFEKLAIVRVLSKANEPQMLDEPTLFDQPEDDQPNDGFDGRTDGHPEN
HEEEEECCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
R
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]