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The map label for this gene is rbsD [H]

Identifier: 62390142

GI number: 62390142

Start: 1322420

End: 1322791

Strand: Direct

Name: rbsD [H]

Synonym: cg1414

Alternate gene names: 62390142

Gene position: 1322420-1322791 (Clockwise)

Preceding gene: 62390141

Following gene: 62390143

Centisome position: 40.28

GC content: 52.69

Gene sequence:

>372_bases
ATGAAAAAGTCCGGTTTACTAAACCCCGATCTGTGTTACGCCATCGCGCGGCTCGGGCACACCGATACCTGGGCAGTGGC
AGATTGCGGATTACCCATCCCAGAACACGTAGAGATCATCGATTTGGCACTCGTGTTTGGGATCCCCACCTTTGAACAAG
TACTGAATGCTCTCAAGCCGGAAGTAGTTGTGGAAGGCGCGGTGATTGCCGAAGGGGCACCCGAACGTATCCGCGAAATG
GTGGATACGGATGTGGAAGTTGTCACGCATGAAGAGCTGAAAGCCCAGCTCGCGGAATGTGCCTTTGTCATTCGAACAGG
GGAGACCACTGCGTATGCGAATGTGATCTTCAAATCAGGCGTAGCTTTCTAA

Upstream 100 bases:

>100_bases
AGCAGCTAAGCTCCTGCGCGGTGAGGACGCTGAAACAGAGGTACCAGTTGAGGTTGTCACTGTGAAGCTCGACAACGTCG
CGGACTTCAAGTAGTCGGCG

Downstream 100 bases:

>100_bases
GAAAGTGTCGTTTTTTGTGCACCTGTTTTGCGGCGCCCCAAGCGCTGCAAAACGGGTGCATTTTGACGTCGAAAAGCAAT
GAATTTAATGCTTTTAACCT

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MKKSGLLNPDLCYAIARLGHTDTWAVADCGLPIPEHVEIIDLALVFGIPTFEQVLNALKPEVVVEGAVIAEGAPERIREM
VDTDVEVVTHEELKAQLAECAFVIRTGETTAYANVIFKSGVAF

Sequences:

>Translated_123_residues
MKKSGLLNPDLCYAIARLGHTDTWAVADCGLPIPEHVEIIDLALVFGIPTFEQVLNALKPEVVVEGAVIAEGAPERIREM
VDTDVEVVTHEELKAQLAECAFVIRTGETTAYANVIFKSGVAF
>Mature_123_residues
MKKSGLLNPDLCYAIARLGHTDTWAVADCGLPIPEHVEIIDLALVFGIPTFEQVLNALKPEVVVEGAVIAEGAPERIREM
VDTDVEVVTHEELKAQLAECAFVIRTGETTAYANVIFKSGVAF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose [H]

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily [H]

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=41.726618705036, Blast_Score=108, Evalue=1e-25,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023064
- InterPro:   IPR007721 [H]

Pfam domain/function: PF05025 RbsD_FucU [H]

EC number: NA

Molecular weight: Translated: 13322; Mature: 13322

Theoretical pI: Translated: 4.29; Mature: 4.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.1 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
4.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSGLLNPDLCYAIARLGHTDTWAVADCGLPIPEHVEIIDLALVFGIPTFEQVLNALKP
CCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCC
EVVVEGAVIAEGAPERIREMVDTDVEVVTHEELKAQLAECAFVIRTGETTAYANVIFKSG
CEEECCCCCCCCCHHHHHHHHCCCHHEEHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCC
VAF
CCC
>Mature Secondary Structure
MKKSGLLNPDLCYAIARLGHTDTWAVADCGLPIPEHVEIIDLALVFGIPTFEQVLNALKP
CCCCCCCCHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHCC
EVVVEGAVIAEGAPERIREMVDTDVEVVTHEELKAQLAECAFVIRTGETTAYANVIFKSG
CEEECCCCCCCCCHHHHHHHHCCCHHEEHHHHHHHHHHHHHHEEECCCCHHHHHHHHHCC
VAF
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA